Fix `tx_filter_variants_by_csqs` to correctly handle the `ignore_splicing` parameter#727

Merged

jkgoodrich merged 11 commits intomainfrom jg/fix_pext_csq_filter

Aug 23, 2024

+216-12

Commits on Aug 21, 2024

Commits on Aug 23, 2024

Fix test_resource_utils.py to reset the gnomad public resource configuration so other test can pull from the correct bucket
jkgoodrich
committed
Add tests for tx_filter_variants_by_csqs
jkgoodrich
committed
Fix tx_filter_variants_by_csqs to ignore_splicing parameter to remove splice consequences from consequence_terms instead of only removing them if they are the worst consequence
jkgoodrich
committed
Remove unused import
jkgoodrich
committed
Format
jkgoodrich
committed
Add install of Hail's install-gcs-connector to Actions
jkgoodrich
committed
add --auth-type UNAUTHENTICATED flag
jkgoodrich
committed
pass argument correctly to install-gcs-connector script
jkgoodrich
committed
Apply suggestions from code review

jkgoodrich
and
ch-kr
authored