Add gecode version globals

broadinstitute · Jan 10, 2025 · 2f08fc3 · 2f08fc3 · KoalaQin · Jan 10, 2025
1 parent 74721cf
commit 2f08fc3
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diff --git a/gnomad/resources/grch37/gnomad.py b/gnomad/resources/grch37/gnomad.py
@@ -20,6 +20,11 @@
 CURRENT_EXOME_COVERAGE_RELEASE = "2.1"
 CURRENT_GENOME_COVERAGE_RELEASE = "2.1"
 
+GENCODE_VERSION_BY_RELEASE = {
+    "2.1": "v19",
+    "2.1.1": "v19",
+}
+
 SUBPOPS = {
     "NFE": ["BGR", "EST", "NWE", "SEU", "SWE", "ONF"],
     "EAS": ["KOR", "JPN", "OEA"],

diff --git a/gnomad/resources/grch38/gnomad.py b/gnomad/resources/grch38/gnomad.py
@@ -42,6 +42,13 @@
 EXOME_AN_RELEASES = ["4.1"]
 GENOME_AN_RELEASES = ["4.1"]
 
+GENCODE_VERSION_BY_RELEASE = {
+    "3.0": "v29",
+    "3.1": "v35",
+    "4.0": "v39",
+    "4.1": "v39",
+}
+
 DATA_TYPES = ["exomes", "genomes", "joint"]
 MAJOR_RELEASES = ["v3", "v4"]
 CURRENT_MAJOR_RELEASE = MAJOR_RELEASES[-1]