Remove internal workflows and scripts #742
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Delete a few more files; update vapor Move more stuff Move out igv docker, ApplyManualVariantFilter, and some unused input templates
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Moves workflows and scripts considered legacy code or that are otherwise not necessary to run gatk-sv. All of these files have been relocated to gatk-sv-internal.
Two WDLs had to be modified:
Some workflows may still be in regular use. They will still be available through Dockstore in previous versions.
We may also consider moving str related code out as well in a future PR.