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v0.3.2 #368

Merged
merged 24 commits into from
Jun 24, 2024
Merged

v0.3.2 #368

merged 24 commits into from
Jun 24, 2024

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sjfleming
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Additional commits for v0.3.2 release

sjfleming and others added 24 commits August 6, 2023 01:12
* Checkpointing, more input formats, HTML report, test suite, documentation, new posterior and estimators, fix readthedocs, improve prior heuristics, Github actions for tests, address memory issues
…lid checkpoint is not loaded. (#258)

If number of tries is exhausted, and ELBO tests are still failing, allow to complete anyway (using checkpoint) so that outputs are produced, but exit(1).
* issue #348 lxml_html_clean dependency

* Fix #306: noise count integer overflow

* Introduce --force-use-checkpoint for redoing v0.3.1 runs

* Add a warning to the README about v0.3.1
In Cell Ranger 7+, there is a longer list of features one can specify in `cellranger multi`. These are added here to the list of allowed features.
Keep test_elbo as part of model, and refer to it there from the retry code
@sjfleming sjfleming merged commit 04c2f5b into master Jun 24, 2024
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5 participants