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Data and analysis code for Dominguez, McDonald et al 2024 paper submission

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Enrichment of microbial DNA in plasma to improve pathogen detection in sepsis

Data and analysis code for Dominguez, McDonald et al 2024 paper submission

To run analysis: Download Julia (developed using Julia 1.10.4)
https://julialang.org/downloads/

Add the julia environment for the analysis in julia
julia -e "using Pkg; Pkg.develop(path=\"./env_DominguezMcDonald2024\")"

Run the primary analysis script
julia ./anaylsisCode_DominguezMcDonald2024.jl

To change the input/output directory paths, edit the paths at the top of the anaylsisCode_DominguezMcDonald2024.jl file.

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Data and analysis code for Dominguez, McDonald et al 2024 paper submission

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