Skip to content

Issues: brentp/mosdepth

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

40 Open 177 Closed
40 Open 177 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Mosdepth fails when run with less than 8GB RAM on ~50MB CRAM
#245 opened Dec 9, 2024 by dennishendriksen
2
Median is Only for Histogram
#242 opened Nov 20, 2024 by DarioS
v3.9.0 not available via quay.io
#240 opened Nov 14, 2024 by bartcharbon
1
Differences in WES Coverage Values (Mosdepth Versions 0.3.3 and 0.3.8)
#234 opened Jun 13, 2024 by niyati1211
2
: in region strings passed to --chrom
#230 opened Apr 22, 2024 by julibeg
addition of min and max counts to prefix.regions.bed.gz
#226 opened Apr 9, 2024 by joelarkman
[question]: mosdepth 0.3.7 via bioconda/docker
#225 opened Mar 21, 2024 by tamuanand
Warnings about invalid chromosome intervals .
#223 opened Feb 18, 2024 by Heather1999
1
Report all chromosomes/regions even though they have zero coverage
#222 opened Feb 12, 2024 by xsoleacha
2
Summary output with --use-median
#220 opened Jan 17, 2024 by Adamtaranto
[Question]: mosdepth 0.3.4 via Docker or Conda
#204 opened Jul 27, 2023 by tamuanand
2
misleading output in summary.txt file
#198 opened Mar 24, 2023 by nservant
3
.mosdepth.region.dist.txt missing values?
#190 opened Dec 6, 2022 by adamrtalbot
In summary.txt what's the difference between length and bases?
#188 opened Nov 21, 2022 by nuno5645
Percentage of Coverage for Exome Bed file
#186 opened Oct 13, 2022 by kiranpatil222
1
Coverage by region vs. Global dist
#184 opened Oct 10, 2022 by hlfreund
8
Optionally report uncovered contigs in summary file
#180 opened Aug 3, 2022 by dpryan79
@brentp
plot.dist.py output to screen only
#178 opened Jul 1, 2022 by space-beaver
4
threshold output to indicate how many bases in each region are covered at the given thresholds.
#176 opened Apr 25, 2022 by asmlgkj
Support streaming from cloud storage buckets
#175 opened Apr 20, 2022 by SHuang-Broad
5
Exact sorting of the output bed file?
#173 opened Mar 30, 2022 by Dario-Galanti
2
Version 0.3.3 "zsh: exec format error: mosdepth" error on Mac
#171 opened Feb 26, 2022 by Calvinblue
2
Avg depth for multiple BAMs with BED input
#165 opened Dec 14, 2021 by Kiran936
1
Out of memory Issue
#161 opened Nov 26, 2021 by yangyxt
5
Coverage 0 for entire chr when using --by
#156 opened Sep 1, 2021 by elleira
7
ProTip! Adding no:label will show everything without a label.