This profile configures Snakemake to run on the Torque Scheduler.
The profile has been modified to set up logging, emailing, and be aware of cluster queue default walltimes for TSCC at UCSD.
To deploy this profile, run
mkdir -p ~/.config/snakemake
cd ~/.config/snakemake
cookiecutter gh:brcopeland/pbs-torque
Then, you can run Snakemake with
snakemake --profile pbs-torque ...
The following resources are supported by on a per-rule basis:
node - set the ppn resource request (defaults to the thread declaration).
mem - set the memory resource request (bytes).
walltime - set the walltime resource (secs).