CI: Install numpy before netcdf4 for pytest-min-version #707
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| push: | |
| branches-ignore: | |
| - master | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| pytest: | |
| runs-on: ubuntu-latest | |
| if: always() | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.x"] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update && sudo apt-get install libhdf5-dev libnetcdf-dev | |
| python -m pip install --upgrade pip | |
| - name: Install package | |
| run: | | |
| pip install -e .[calc,tests] | |
| - name: Test with pytest | |
| run: | | |
| pytest -vv --long --cov | |
| # test with oldest supported version of packages | |
| pytest-min-versions: | |
| runs-on: ubuntu-latest | |
| if: always() | |
| strategy: | |
| matrix: | |
| python-version: ["3.8"] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update && sudo apt-get install libhdf5-dev libnetcdf-dev | |
| python -m pip install --upgrade pip | |
| # Install numpy first because this version of netcdf4 will install from source and needs it at build-time | |
| pip install --upgrade numpy==1.18.0 | |
| pip install --upgrade boutdata==0.1.4 xarray==0.18.0 dask==2.10.0 natsort==5.5.0 matplotlib==3.1.1 animatplot==0.4.2 netcdf4==1.5.0 Pillow==6.1.0 | |
| - name: Install package | |
| run: | | |
| pip install -e .[tests] | |
| - name: Test with pytest | |
| run: | | |
| pytest -vv --long --cov | |
| # Need to tidy up the things that flake8 finds before we activate this | |
| #flake8: | |
| # runs-on: ubuntu-latest | |
| # if: always() | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - name: Set up Python | |
| # uses: actions/setup-python@v1 | |
| # - name: Install dependencies | |
| # run: | | |
| # python -m pip install --upgrade pip | |
| # - name: Lint with flake8 | |
| # run: | | |
| # pip install flake8 | |
| # flake8 |