0.6: CEGAR-based trapspace reprogramming
New features:
bonesis.reprogramming.marker_reprogramming
uses new CEGAR-based implementation (http://arxiv.org/abs/2305.02442). The other implementation is still available using thealgorithm="complementary"
option.
bonesis.reprogramming.trapspace_reprogramming
is an alias.InfluenceGraph
: optionexact="unsigned"
allows enforcing that the Boolean networks use all the interactions of the influence graph with unsigned edges c632b3a
Bug fixes:
non_reach
constraint inmutant
contexts