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v0.2.2

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@bluenote-1577 bluenote-1577 released this 05 Jul 01:42
· 2 commits to main since this release
v0.2.2
666894c

v0.2.2 released - 2024-07-04

Major

  • added the --small-genomes preset. This is just an alias for -c 30 -m 200 --faster-small. This makes skani much faster when comparing hundreds of thousands of small genomes.

Minor

  • fixed a bug where skani triangle --full-matrix gave different results between STDOUT and -o (thanks to Florian Plaza Onate)
  • added a --diagonal option (suggested by Antonio Camargo) to print diagonal entries for sparse and lower-triangular distance matrices
  • added a warning to use --faster-small when comparing too many contigs (e.g. viruses, plasmids).
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