Feature/add template

.devcontainer/Dockerfile

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+FROM mcr.microsoft.com/devcontainers/python:0-3.10
+
+RUN apt-get update && apt install git-lfs
+
+RUN python -m pip install --upgrade pip \
+    && python -m pip install 'flit>=3.8.0'
+
+ENV FLIT_ROOT_INSTALL=1
+
+COPY pyproject.toml .
+RUN touch README.md \
+    && mkdir -p src/deps_rocker \
+    && python -m flit install --only-deps --deps develop \
+    && rm -r pyproject.toml README.md src

.devcontainer/devcontainer.json

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+{
+	"name": "deps_rocker",
+	"build": {
+		"dockerfile": "Dockerfile",
+		"context": ".."
+	},
+	// "onCreateCommand": "pre-commit install --hook-type commit-msg",
+	"postCreateCommand": "flit install --symlink;",
+	"customizations": {
+		"vscode": {
+			"extensions": [
+				"ms-python.python",
+				"ms-python.vscode-pylance",
+				"ms-python.pylint",
+				"ms-python.black-formatter",
+				"njpwerner.autodocstring",
+				"charliermarsh.ruff",
+				"mhutchie.git-graph",
+				"eamodio.gitlens",
+				"tamasfe.even-better-toml",
+				"Codium.codium",
+				"ms-azuretools.vscode-docker",
+				"ryanluker.vscode-coverage-gutters"
+			]
+		}
+	},
+}

.github/dependabot.yml

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+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates 
+
+version: 2
+updates:
+  - package-ecosystem: "pip" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "monthly"
+    groups:
+      dev-dependencies:
+        #try to group all development dependencies updates into a single pr
+        patterns:          
+          - "black"
+          - "check-manifest"
+          - "pre-commit"
+          - "pylint"
+          - "pytest"
+          - "pytest-cov"          
+          - "hypothesis"
+          - "ruff"
+          - "coverage"
+      lib-dependencies:
+        #try to group all third party library updates into a single pr
+        patterns:
+          - "*"

.github/workflows/ci.yml

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+# This workflow will install Python dependencies, run tests and lint with a single version of Python
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+
+name: CI
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]  
+
+permissions:
+  contents: read
+
+jobs:
+
+  black:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: psf/black@stable
+  ruff:
+    runs-on: ubuntu-latest
+    needs: [black]
+    steps:
+      - uses: actions/checkout@v3
+      - uses: chartboost/ruff-action@v1
+  build:
+    runs-on: ubuntu-latest
+    needs: [ruff]
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python 3.10
+      uses: actions/setup-python@v3
+      with:
+        python-version: "3.10"
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install flit
+        flit install --extras test
+    - run: |
+        pylint $(git ls-files '*.py')
+    - name: Test with pytest
+      run: |
+        coverage run -m pytest
+    - name: Upload coverage reports to Codecov
+      uses: codecov/codecov-action@v3
+      env:
+        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

.github/workflows/publish.yml

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+name: Auto-publish
+
+on: [push, workflow_dispatch]
+
+jobs:
+  # Auto-publish when version is increased
+  publish-job:
+    # Only publish on `main` branch
+    if: github.ref == 'refs/heads/main'
+    runs-on: ubuntu-latest
+    permissions:  # Don't forget permissions
+      contents: write
+
+    steps:
+    - uses: etils-actions/pypi-auto-publish@v1
+      with:
+        pypi-token: ${{ secrets.PYPI_API_TOKEN }}
+        gh-token: ${{ secrets.GITHUB_TOKEN }}
+        parse-changelog: true

.vscode/active_file.cfg

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+/home/ags/deps_rocker/test/test_basic.py

.vscode/extensions.json

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+{
+    "recommendations": [
+        "ms-python.python",
+        "ms-python.vscode-pylance",
+        "ms-python.pylint",
+        "ms-python.black-formatter",
+        "njpwerner.autodocstring",
+        "charliermarsh.ruff",
+        "mhutchie.git-graph",
+        "eamodio.gitlens",
+        "tamasfe.even-better-toml",
+        "Codium.codium",
+        "ms-azuretools.vscode-docker",
+        "ryanluker.vscode-coverage-gutters"
+    ]
+}

.vscode/settings.json

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+{
+	"python.testing.pytestArgs": [],
+	"python.testing.unittestEnabled": false,
+	"python.testing.pytestEnabled": true,
+	"[python]": {
+		"editor.defaultFormatter": "ms-python.black-formatter",
+		"editor.formatOnSave": true,
+	},
+	"files.exclude": {
+		"**/__pycache__/**": true,
+		"/home/vscode/.local/lib/python3.10/site-packages/deps_rocker/**": true
+	},
+	"python.analysis.autoImportCompletions": false //vscode gets it wrong more than right and mostly gets in the way
+}

.vscode/tasks.json

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+{
+	"version": "2.0.0",
+	"tasks": [
+		{
+			"label": "set <cfg> from active file; sa",
+			"type": "shell",
+			"command": "echo ${file} > ${workspaceFolder}/.vscode/active_file.cfg; echo Setting the current file: ${file} as the active file.",
+			"problemMatcher": [],
+			"group": {
+				"kind": "test",
+				"isDefault": "True"
+			}
+		},
+		{
+			"label": "run <cfg>",
+			"type": "shell",
+			"command": "RUNFILE=$(cat ${workspaceFolder}/.vscode/active_file.cfg); echo Running file: $RUNFILE; python3 $RUNFILE",
+			"problemMatcher": [],
+			"group": {
+				"kind": "build",
+				"isDefault": "True"
+			}
+		},
+		{
+			"label": "autoformat",
+			"detail": "Use ruff and black to automatically fix and format the code",
+			"type": "shell",
+			"command": "ruff check . --fix && black ."
+		},
+		{
+			"label": "autoformat, commit and push",
+			"detail": "Use ruff and black to automatically fix and format the code and commit changes",
+			"type": "shell",
+			"dependsOn": [
+				"autoformat"
+			],
+			"command": "git commit -a -m 'fix: autoformatted and ruff --fix all code' || true && git push"
+		},
+		{
+			"label": "pylint",
+			"detail": "Run pylint on files tracked by git",
+			"type": "shell",
+			"command": "pylint $(git ls-files '*.py') "
+		},
+		{
+			"label": "code coverage",
+			"detail": "Run code coverage and print a coverage report, also update coverage.xml for in the in-editor coverage gutter",
+			"type": "shell",
+			"command": "coverage run -m pytest; coverage xml -o coverage.xml"
+		},
+		{
+			"label": "code coverage report",
+			"detail": "Display the code coverage report. This assumes you have already have a coverage report generated. If not run the code ocverage task",
+			"type": "shell",
+			"dependsOn": [
+				"code coverage"
+			],
+			"command": "coverage report -m"
+		},
+		{
+			"label": "pytest duration",
+			"detail": "Run pytest and track the duration of each test",
+			"type": "shell",
+			"command": "pytest --durations=0"
+		},
+		{
+			"label": "check CI",
+			"detail": "Runs the basic formatting and linting checks performed by CI",
+			"type": "shell",
+			"dependsOn": [
+				"autoformat",
+				"pylint",
+				"code coverage report"
+			],
+			"dependsOrder": "sequence",
+		},
+		{
+			"label": "check CI, commit and push",
+			"detail": "Pull,s from main, runs the basic formatting and linting checks performed by CI and pushes changes",
+			"type": "shell",
+			"dependsOn": [
+				"git pull origin main",
+				"check CI",
+				"autoformat, commit and push",
+			],
+			"dependsOrder": "sequence",
+		},
+		{
+			"label": "git pull origin main",
+			"detail": "merge changes from master into the current branch and push",
+			"type": "shell",
+			"command": "git pull --commit --no-edit ; git pull origin main --commit --no-edit && git push"
+		},
+		{
+			"label": "git push",
+			"detail": "merge changes from master into the current branch and push",
+			"type": "shell",
+			"command": "git push"
+		},
+		{
+			"label": "git pull origin main and push",
+			"detail": "merge changes from master into the current branch and push",
+			"type": "shell",
+			"dependsOn": [
+				"git pull origin main",
+				"git push"
+			],
+			"dependsOrder": "sequence",
+		},
+		{
+			"label": "update from template repo",
+			"detail": "Pull any changes from the template repo into this repo by adding it as a remote. The remote is removed at the end of the command.  You may need to resolve merge conflicts",
+			"type": "shell",
+			"command": "scripts/update_from_template.sh"
+		},
+		{
+			"label": "update from template repo keep ours",
+			"detail": "Pull any changes from the template repo into this repo by adding it as a remote. The remote is removed at the end of the command.  You may need to resolve merge conflicts",
+			"type": "shell",
+			"command": "scripts/update_from_template_ours.sh"
+		},
+		{
+			"label": "rename template project name and commit",
+			"detail": "Replaces all instances of the template project name with a new name. ",
+			"type": "shell",
+			"command": "scripts/rename_project.sh ${input:new_project_name}; git commit -a -m 'rename project'"
+		},
+		{
+			"label": "first time setup of project",
+			"detail": "Pulls updates from the template repo and replaces all instances of the template project name with a new name.",
+			"type": "shell",
+			"dependsOn": [
+				"update from template repo",
+				"rename template project name and commit",
+				"update from template repo keep ours"
+			],
+			"dependsOrder": "sequence",
+		},
+		{
+			"label": "flit install",
+			"type": "shell",
+			"command": "flit install --symlink"
+		},
+		{
+			"label": "flit publish",
+			"type": "shell",
+			"command": "flit publish"
+		},				
+		{
+			"label": "setup: host",
+			"detail": "Sets up docker, nvidia docker git-lfs and rocker which are used to clone and setup docker containers",
+			"type": "shell",
+			"command": "./scripts/setup_host.sh",
+			"presentation": {
+				"reveal": "always",
+				"panel": "new"
+			  }
+		},
+		{
+			"label": "launch container",
+			"detail": "Uses rocker to launch a container and spawns a new vscode window attached to the container",
+			"type": "shell",
+			"command": "scripts/launch_vscode.sh"
+		},
+		{
+            "label": "Install All Recommended Extensions",
+            "type": "shell",           
+            "linux": {
+                "command": "cat .vscode/extensions.json | jq .recommendations[] | xargs -n 1 code . --install-extension"
+            },
+            "runOptions": {
+                "runOn": "folderOpen"
+            },
+            "presentation": {
+                "reveal": "always"
+            },
+        },	
+		{
+            "label": "set git config recurse submodules",
+            "type": "shell",           
+            "linux": {
+                "command": [" git config submodule.recurse true"],
+            },
+            "runOptions": {
+                "runOn": "folderOpen"
+            },
+            "presentation": {
+                "reveal": "silent"
+            },
+        },	
+	],
+	"inputs": [
+		{
+			"type": "promptString",
+			"id": "new_project_name",
+			"description": "The new name of the project",
+			"default": "python_template"
+		}
+	]
+}

CHANGELOG.md

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+# Changelog
+
+## python_tempate
+
+## [0.0.0]
+
+