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The variance is now determined from using generalised least squares on a number of random samples from the Gaussian process, this has the benefit of being more accurate and efficient.
As a result of the above there is no longer a "Sampling Likelihood" tqdm bar.
There is now a rtol kwarg for the bootstap_GLS method, this controls the rtol in the call to the scipy.linalg.pinvh that is used to stabilise the large matrices.
All documentation has been adapted to reflect this methodological change.