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Update Finch to v0.7.7 #223

Merged
merged 5 commits into from
Nov 17, 2021
Merged

Update Finch to v0.7.7 #223

merged 5 commits into from
Nov 17, 2021

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huard
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@huard huard commented Nov 16, 2021

Overview

Changes

Non-breaking changes

  • New component version Finch:0.7.7

Related Issue / Discussion

Additional Information

Revert "added SENTRY_ENV environment variable" by @matprov in #213
Refresh notebooks by @Zeitsperre in bird-house/finch#201
Add SENTRY_ENV param by @matprov in bird-house/finch#203
Multiple rcps for ensemble processes by @aulemahal in bird-house/finch#202
Remove bugging drop after geoserver upgrade by @aulemahal in bird-house/finch#207
Update to xclim 0.31 by @aulemahal in bird-house/finch#209
Fix xarray, dask and gunicorn related hang by @cjauvin in bird-house/finch#204
run load() before switching to single-threaded scheduler by @huard in bird-house/finch#211
Add average flag for ensemble processes by @aulemahal in bird-house/finch#210
Revert "added SENTRY_ENV environment variable" by @matprov in bird-house/finch#213

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LGTM. Let's wait for the Jenkins from DACCS Pipeline result then you can perform the bump2version jazz and merge this PR. Don't forget to copy/paste the PR description into the merge commit.

Oh, update the CHANGES.md as well.

Same procedure as in #195 (review)

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/772/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : finch_update_v0.7.6
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-88.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/658/

NOTEBOOK TEST RESULTS
    
[2021-11-16T15:30:13.248Z] ============================= test session starts ==============================
[2021-11-16T15:30:13.248Z] platform linux -- Python 3.7.10, pytest-6.2.5, py-1.10.0, pluggy-0.13.1
[2021-11-16T15:30:13.248Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2021-11-16T15:30:13.248Z] plugins: anyio-3.3.0, dash-1.21.0, nbval-0.9.6, tornasync-0.6.0.post2
[2021-11-16T15:30:13.248Z] collected 221 items
[2021-11-16T15:30:13.248Z] 
[2021-11-16T15:30:23.235Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2021-11-16T15:30:42.871Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .FFFFF.        [  8%]
[2021-11-16T15:30:53.396Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [ 10%]
[2021-11-16T15:31:06.866Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 14%]
[2021-11-16T15:31:09.422Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 19%]
[2021-11-16T15:31:24.294Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 19%]
[2021-11-16T15:31:25.673Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 19%]
[2021-11-16T15:31:31.430Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 23%]
[2021-11-16T15:31:37.746Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 25%]
[2021-11-16T15:35:09.485Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 32%]
[2021-11-16T15:36:04.403Z] ..............                                                           [ 38%]
[2021-11-16T15:36:11.660Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 40%]
[2021-11-16T15:36:13.626Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 43%]
[2021-11-16T15:36:36.830Z] .................                                                        [ 51%]
[2021-11-16T15:36:42.691Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 53%]
[2021-11-16T15:36:44.088Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 54%]
[2021-11-16T15:36:54.129Z] ..F....FF.                                                               [ 58%]
[2021-11-16T15:37:04.152Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 63%]
[2021-11-16T15:37:12.986Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 66%]
[2021-11-16T15:37:57.204Z] finch-master/docs/source/notebooks/subset.ipynb ....................     [ 75%]
[2021-11-16T15:37:57.469Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 75%]
[2021-11-16T15:38:00.768Z] ......                                                                   [ 78%]
[2021-11-16T15:38:22.728Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 78%]
[2021-11-16T15:38:36.668Z] .............                                                            [ 84%]
[2021-11-16T15:38:46.682Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 85%]
[2021-11-16T15:39:31.967Z] ....s.                                                                   [ 87%]
[2021-11-16T15:39:44.210Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2021-11-16T15:39:51.179Z] ...                                                                      [ 89%]
[2021-11-16T15:40:17.769Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2021-11-16T15:40:45.109Z] ......                                                                   [ 92%]
[2021-11-16T15:40:49.495Z] notebooks/hummingbird.ipynb ............                                 [ 98%]
[2021-11-16T15:42:27.670Z] notebooks/stress-tests.ipynb ....                                        [100%]
[2021-11-16T15:42:27.670Z] 
[2021-11-16T15:42:27.670Z] =================================== FAILURES ===================================
    
  

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tlvu commented Nov 16, 2021

finch-usage.ipynb fixed. The rest are known (weaver_example.ipynb) or intermittent (WCS_example.ipynb) errors, this PR is good to go.

Thanks for the quick fix.

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@huard I've spotted an issue while deploying 0.7.6.

See bird-house/finch#213 for the fix.

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/773/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : finch_update_v0.7.6
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-88.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/659/

NOTEBOOK TEST RESULTS
    
[2021-11-16T15:58:05.204Z] ============================= test session starts ==============================
[2021-11-16T15:58:05.204Z] platform linux -- Python 3.7.10, pytest-6.2.5, py-1.10.0, pluggy-0.13.1
[2021-11-16T15:58:05.204Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2021-11-16T15:58:05.204Z] plugins: anyio-3.3.0, dash-1.21.0, nbval-0.9.6, tornasync-0.6.0.post2
[2021-11-16T15:58:05.204Z] collected 221 items
[2021-11-16T15:58:05.204Z] 
[2021-11-16T15:58:13.900Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2021-11-16T16:00:01.699Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb ...FFF.        [  8%]
[2021-11-16T16:00:10.095Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [ 10%]
[2021-11-16T16:00:20.193Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 14%]
[2021-11-16T16:00:23.197Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 19%]
[2021-11-16T16:00:38.135Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 19%]
[2021-11-16T16:00:38.136Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 19%]
[2021-11-16T16:00:43.401Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 23%]
[2021-11-16T16:00:50.896Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 25%]
[2021-11-16T16:03:49.933Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 32%]
[2021-11-16T16:04:48.108Z] ..............                                                           [ 38%]
[2021-11-16T16:04:53.313Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 40%]
[2021-11-16T16:04:55.231Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 43%]
[2021-11-16T16:05:17.354Z] .................                                                        [ 51%]
[2021-11-16T16:05:24.151Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 53%]
[2021-11-16T16:05:25.554Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 54%]
[2021-11-16T16:05:56.623Z] ..F...FFF.                                                               [ 58%]
[2021-11-16T16:06:07.045Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 63%]
[2021-11-16T16:06:16.390Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 66%]
[2021-11-16T16:06:57.918Z] finch-master/docs/source/notebooks/subset.ipynb ....................     [ 75%]
[2021-11-16T16:06:59.303Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 75%]
[2021-11-16T16:07:02.608Z] ......                                                                   [ 78%]
[2021-11-16T16:07:20.743Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 78%]
[2021-11-16T16:07:36.606Z] .............                                                            [ 84%]
[2021-11-16T16:07:44.756Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 85%]
[2021-11-16T16:08:30.068Z] ....s.                                                                   [ 87%]
[2021-11-16T16:08:40.114Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2021-11-16T16:08:46.235Z] ...                                                                      [ 89%]
[2021-11-16T16:09:04.361Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2021-11-16T16:09:30.735Z] ......                                                                   [ 92%]
[2021-11-16T16:09:37.069Z] notebooks/hummingbird.ipynb ............                                 [ 98%]
[2021-11-16T16:11:15.107Z] notebooks/stress-tests.ipynb ....                                        [100%]
[2021-11-16T16:11:15.107Z] 
[2021-11-16T16:11:15.107Z] =================================== FAILURES ===================================
    
  

@huard huard changed the title Update Finch to v0.7.6 Update Finch to v0.7.7 Nov 16, 2021
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/774/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : finch_update_v0.7.6
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS
    
</code>

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tlvu commented Nov 16, 2021

@matprov did the deployment failed in the pipeline? The results are empty.

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matprov commented Nov 16, 2021

@matprov did the deployment failed in the pipeline? The results are empty.

@tlvu It's actually caused by the fact that Finch 0.7.7 wasn't released when the infra has been launched.

Pulling finch (birdhouse/finch:version-0.7.7)...
manifest for birdhouse/finch:version-0.7.7 not found: manifest unknown: manifest unknown
No containers to restart
executing './components/weaver/post-docker-compose-up'
+ set +o
+ old_state=set +o errexit
set +o noglob
set +o ignoreeof
set +o interactive
set +o monitor
set +o noexec
set +o stdin
set -o xtrace
set +o verbose
set +o vi
set +o emacs
set +o noclobber
set +o allexport
set +o notify
set +o nounset
set +o priv
set +o nolog
set +o debug
+ set +x
Running: ./components/weaver/post-docker-compose-up
  Requested Weaver WPS providers: [
    catalog
    finch
    flyingpigeon
    hummingbird
    malleefowl
    raven
]
  Will retry requests at most for 60s
[Weaver] Wait for response from Magpie to login [https://host-140-88.rdext.crim.ca/magpie]...........................................................
[Weaver] ERROR: Timeout (60s)! Failed to register all providers specified in WEAVER_WPS_PROVIDERS. Magpie is not responding.

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matprov commented Nov 16, 2021

run tests

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/775/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : finch_update_v0.7.6
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-46.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/660/

NOTEBOOK TEST RESULTS
    
[2021-11-16T21:25:45.890Z] ============================= test session starts ==============================
[2021-11-16T21:25:45.890Z] platform linux -- Python 3.7.10, pytest-6.2.5, py-1.10.0, pluggy-0.13.1
[2021-11-16T21:25:45.890Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2021-11-16T21:25:45.890Z] plugins: anyio-3.3.0, dash-1.21.0, nbval-0.9.6, tornasync-0.6.0.post2
[2021-11-16T21:25:45.890Z] collected 221 items
[2021-11-16T21:25:45.890Z] 
[2021-11-16T21:25:53.261Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2021-11-16T21:26:36.794Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  8%]
[2021-11-16T21:26:46.986Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [ 10%]
[2021-11-16T21:26:56.815Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 14%]
[2021-11-16T21:26:59.359Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 19%]
[2021-11-16T21:27:14.254Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 19%]
[2021-11-16T21:27:14.255Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 19%]
[2021-11-16T21:27:18.323Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 23%]
[2021-11-16T21:27:25.362Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 25%]
[2021-11-16T21:30:11.195Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 32%]
[2021-11-16T21:31:10.468Z] ..............                                                           [ 38%]
[2021-11-16T21:31:17.705Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 40%]
[2021-11-16T21:31:19.920Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 43%]
[2021-11-16T21:31:47.143Z] .................                                                        [ 51%]
[2021-11-16T21:31:53.511Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 53%]
[2021-11-16T21:31:55.418Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 54%]
[2021-11-16T21:32:05.116Z] ..F....FF.                                                               [ 58%]
[2021-11-16T21:32:16.421Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 63%]
[2021-11-16T21:32:24.703Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 66%]
[2021-11-16T21:33:16.868Z] finch-master/docs/source/notebooks/subset.ipynb ....................     [ 75%]
[2021-11-16T21:33:16.868Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 75%]
[2021-11-16T21:33:20.178Z] ......                                                                   [ 78%]
[2021-11-16T21:33:38.310Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 78%]
[2021-11-16T21:33:53.870Z] .............                                                            [ 84%]
[2021-11-16T21:34:03.864Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 85%]
[2021-11-16T21:34:45.299Z] ....s.                                                                   [ 87%]
[2021-11-16T21:34:55.324Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2021-11-16T21:35:03.201Z] ...                                                                      [ 89%]
[2021-11-16T21:35:21.327Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2021-11-16T21:35:49.021Z] ......                                                                   [ 92%]
[2021-11-16T21:35:55.870Z] notebooks/hummingbird.ipynb ............                                 [ 98%]
[2021-11-16T21:37:33.813Z] notebooks/stress-tests.ipynb ....                                        [100%]
[2021-11-16T21:37:33.814Z] 
[2021-11-16T21:37:33.814Z] =================================== FAILURES ===================================
    
  

@github-actions github-actions bot added ci/operations Continuous Integration components documentation Improvements or additions to documentation labels Nov 16, 2021
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/776/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : finch_update_v0.7.6
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-46.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/661/

NOTEBOOK TEST RESULTS
    
[2021-11-16T23:29:44.635Z] ============================= test session starts ==============================
[2021-11-16T23:29:44.635Z] platform linux -- Python 3.7.10, pytest-6.2.5, py-1.10.0, pluggy-0.13.1
[2021-11-16T23:29:44.635Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2021-11-16T23:29:44.635Z] plugins: anyio-3.3.0, dash-1.21.0, nbval-0.9.6, tornasync-0.6.0.post2
[2021-11-16T23:29:44.635Z] collected 221 items
[2021-11-16T23:29:44.635Z] 
[2021-11-16T23:29:52.954Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2021-11-16T23:30:31.861Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  8%]
[2021-11-16T23:30:41.434Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [ 10%]
[2021-11-16T23:30:50.181Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 14%]
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[2021-11-16T23:35:37.255Z] ..............                                                           [ 38%]
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[2021-11-16T23:36:08.341Z] .................                                                        [ 51%]
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[2021-11-16T23:36:46.812Z] ..F...FFF.                                                               [ 58%]
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[2021-11-16T23:37:49.327Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 75%]
[2021-11-16T23:37:52.907Z] ......                                                                   [ 78%]
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[2021-11-16T23:38:26.912Z] .............                                                            [ 84%]
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[2021-11-16T23:39:19.166Z] ....s.                                                                   [ 87%]
[2021-11-16T23:39:29.193Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2021-11-16T23:39:37.149Z] ...                                                                      [ 89%]
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[2021-11-16T23:40:24.889Z] ......                                                                   [ 92%]
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[2021-11-16T23:42:11.463Z] 
[2021-11-16T23:42:11.463Z] =================================== FAILURES ===================================
    
  

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LGTM

@huard huard merged commit ca774b0 into master Nov 17, 2021
@huard huard deleted the finch_update_v0.7.6 branch November 17, 2021 14:21
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4 participants