Merge pull request #22 from biowdl/release-v1.0.1

Release v1.0.1

.github/workflows/ci.yml

@@ -11,7 +11,7 @@ jobs:
       - name: Set up python
         uses: actions/setup-python@v2
         with:
-          python-version: '3.10'
+          python-version: '3.12'
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
@@ -24,10 +24,10 @@ jobs:
     strategy:
       matrix:
         python-version:
-          - '3.7'
-          - '3.8'
           - '3.9'
           - '3.10'
+          - '3.11'
+          - '3.12'
     steps:
       - uses: actions/checkout@v1
       - name: Set up python ${{ matrix.python-version }}

.readthedocs.yaml

@@ -0,0 +1,35 @@
+# Read the Docs configuration file for Sphinx projects
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+# Set the OS, Python version and other tools you might need
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.12"
+    # You can also specify other tool versions:
+    # nodejs: "20"
+    # rust: "1.70"
+    # golang: "1.20"
+
+# Build documentation in the "docs/" directory with Sphinx
+sphinx:
+  configuration: docs/conf.py
+  # You can configure Sphinx to use a different builder, for instance use the dirhtml builder for simpler URLs
+  # builder: "dirhtml"
+  # Fail on all warnings to avoid broken references
+  # fail_on_warning: true
+
+# Optionally build your docs in additional formats such as PDF and ePub
+# formats:
+#   - pdf
+#   - epub
+
+# Optional but recommended, declare the Python requirements required
+# to build your documentation
+# See https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html
+python:
+  install:
+    - requirements: requirements-docs.txt

HISTORY.rst

@@ -3,6 +3,13 @@
 Changelog
 =========
 
+v1.0.1
+------
+
+- Added setuptools as a dependency. In some environments setuptools may
+  not be installed by default. This package uses it for its core
+  functionality, so it was added as an explicit requirment.
+
 v1.0.0
 ------
 

requirements.txt

@@ -1,2 +1,3 @@
 miniwdl>=1.0
-jinja2
+jinja2
+setuptools

setup.py

@@ -24,7 +24,7 @@
     LONG_DESCRIPTION = readme_file.read()
 
 setup(name="WDL-AID",
-      version="1.0.0",
+      version="1.0.1",
       description="Automatic Input Documentation for WDL workflows",
       long_description=LONG_DESCRIPTION,
       long_description_content_type='text/markdown',
@@ -36,7 +36,9 @@
         "Programming Language :: Python :: 3.8",
         "Programming Language :: Python :: 3.9",
         "Programming Language :: Python :: 3.10",
-        "Development Status :: 3 - Alpha",
+        "Programming Language :: Python :: 3.11",
+        "Programming Language :: Python :: 3.12",
+        "Development Status :: 5 - Production/Stable",
         "License :: OSI Approved :: MIT License",
       ],
       keywords=["bioinformatics", "WDL", "documentation"],
@@ -49,7 +51,8 @@
       package_data={'': ["*.j2"]},
       install_requires=[
         "miniwdl>=1.0",
-        "jinja2"
+        "jinja2",
+        "setuptools"
       ],
       entry_points={
           "console_scripts":

tox.ini

@@ -1,12 +1,12 @@
 [tox]
-envlist = py37,py38,py39,py310
+envlist = py39,py310,py311,py312
 
 [gh-actions]
 python = 
-    3.7: py37
-    3.8: py38
     3.9: py39
     3.10: py310
+    3.11: py311
+    3.12: py312
 
 [testenv]
 deps =
@@ -19,4 +19,4 @@ commands =
 
 [testenv:py3-lint]
 deps = flake8
-commands = flake8 src/
+commands = flake8 src/