CIRIquant_v1.1.3

• Reduced number of requirements in the config file
• Update usage in CIRI_DE_replicate

CIRIquant_v1.1.2

version 1.1.2:

• Thanks @osagiei for improving codes in CIRI_DE.R
• Added strand information in prep_CIRIquant output
• Rename CIRI to CIRIquant to avoid collision

CIRIquant_v1.1.1

version 1.1.1:

• Fixed bugs
• Update edgeR to the latest version

CIRIquant_v1.1

version 1.1:

• Fixed bug.
• Support for stranded library.
• Support for GFF3 format annotation input.

CIRIquant_v1.0.2

version 1.0.2:

• Fixed bug in circRNA annotation

CIRIquant_v1.0.1

version 1.0.1:

• Fixed bug in pickling results from mutliprocessing jobs
• Synced version number with pypi.org

CIRIquant_v1.0

version 1.0:

• Improved performance
• Add differential expression for study with paired/unpaired replicates

CIRIquant_v0.2.0

version 0.2.0:

• Fixed several bugs
• Now support GTF format annotation file from GENCODE, Ensembl and UCSC table browser

CIRIquant_v0.1.0

Beta test version for CIRIquant