Code

WIP: Cool Results Page#63

Code

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wasade merged 59 commits intomasterbiocore/microsetta-interface:masterfrom st_dh_cool_results_pagebiocore/microsetta-interface:st_dh_cool_results_pageCopy head branch name to clipboardMar 2, 2021

+51,738-46

Commits

Commits on Dec 9, 2020

• Skeleton for new results page with events linked, showing where to fire off ajax requests

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• HowYouCompare tab text and placeholders

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Commits on Dec 10, 2020

• Fills in alpha diversity, beta diversity and taxonomy tabs based on existing results page implementation

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Commits on Dec 11, 2020

• removed some console logs

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Commits on Dec 12, 2020

• updateCompare now fills in available text fields. Still waiting on more URLs for bacterial and archaeal counts

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• cleaned up logging and commented out all the variables used for testing while we finish up public api server

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Commits on Dec 15, 2020

• Workaround for Emperor not noticing when its tab changes from display:none to display:block. We now trigger a resize event on the window when the emperor tab is selected, which emperor links to det…

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• Add country and title to emperor metadata categories

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Commits on Dec 16, 2020

• Added data tables extensions. Added csv download button for taxonomy. Fixed missing column headers on taxonomy table

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• Removed leftover attempt to set column names

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• Merge pull request #65 from biocore/st_dh_fix_emperor_width

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• Merge pull request #66 from biocore/st_dh_taxonomy_download

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• Collapsed Dataset and Data Type into just Dataset. Some hacky workarounds for jquery event handling while Emperor is loading in

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• Taxa rank violin plot with mock data. Need ajax for real data

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Commits on Dec 17, 2020

• Ajax to fill in violin taxa abundance plot

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• Parse the taxonomy table data to collapse rows that only differ by species, summing their relative abundances.

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Commits on Dec 18, 2020

• Plotly plots for alpha diversity

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• Restricts to dataset

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• Added user's sample to the alpha diversity plots

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Commits on Dec 22, 2020

• Fixed non stylistic/strict mode issues

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Commits on Dec 30, 2020

• Merge pull request #64 from biocore/st_dh_how_you_compare

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Commits on Jan 4, 2021

• Merged st_dh_plotly_percentile

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• syncing up before merging the PR

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• Dangit, restore barcode

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• Merge pull request #68 from biocore/st_dh_cool_results_ajax_dataset

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• Merged st_dh_cool_results_page prior to including the pr

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• Merge pull request #69 from biocore/st_dh_taxa_rank_plot

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Commits on Jan 5, 2021

• Gluing PRs together and fixing some mismatches due to changes in public api

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• JS Style pass, strict mode now turned on

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• Fixed broken fake tab links

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• Sprinkled semicolons everywhere

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Commits on Feb 4, 2021

• Point all requests at selected dataset

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• state dot

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• Moved resize hook into emperor init after ec is set, specified dataset on routes that didn't specify dataset

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• Rebuild taxonomy table when you switch dataset

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• Hold onto data table, dangit emperor

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• Disabling emperor to see if its breaking taxonomy

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• Flag enabling recreation of datatable when switching dataset

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• Keep control of jquery when emperor loads

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• Strict

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• Don't let emperor steal my jquery and overwrite my plugins

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• No Conflicts in emperor loader

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Commits on Feb 5, 2021

• Going mad

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• Fixed error displaying emperor for samples not in displayed pcoa that then prevented emperor from being reloaded later

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Commits on Mar 1, 2021

• Pass sample_id to vioscreen url generation

  

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• Remove checkmark for topfoodreport

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• Visually disables sample editing if sample.sample_edit_locked is set

  

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• Disables removal of samples that have sample_remove_locked. Ideally would also show a tooltip saying why, but waiting on popper inclusion in another branch

  

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• Adds new accounts/acct_id/sources/src_id/remove route to remove a source (that has no samples associated with it)

  

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• Reverted change to server_config. Default should still point to localhost.

  

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• Removed leftover debugging

  

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• Removed leftover debug

  

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• Updated warning text to be more scary

  

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• Uses vioscreen status to decide whether to show report pdf or questionnaire

  

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• We no longer ask user to fill in vioscreen survey upon entering sample info for environmental or animal samples

  

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• Add a results-experimental endpoint, adjust existing results to use the 16S dataset

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• Filled in remaining madlibs and updated wording

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Commits on Mar 2, 2021

• Fixed hard coded urls

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• Uses new route to retrieve datasets based on sample id

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