Update zol to 1.5.3

[BiocondaBot]

Update zol: 1.5.2 → 1.5.3

Info	Link or Description
Recipe	recipes/zol (click to view/edit other files)
Summary	zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters.
Home	https://github.com/Kalan-Lab/zol
Releases	https://github.com/Kalan-Lab/zol/tags
Recipe Maintainer(s)	@raufs
Author	@Kalan-Lab

---

This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request involves an update to the meta.yaml file for the zol package. The version of the package has been incremented from 1.5.2 to 1.5.3, which necessitated a change in the source URL to reflect the new version's tarball. Additionally, the SHA256 checksum has been updated to 2a7a9bd0ade0306fae95e9066f9d76682c34095519d6f6c46ee6d566d8c77fa3, indicating modifications in the package contents. The dependency on the miniprot package has also been revised; specifically, the version constraint for miniprot has been changed from =0.7 to =0.13 for the x86_64 architecture, and from >=0.7 to >=0.13 for the aarch64 architecture. These changes reflect an upgrade to a newer version of the miniprot package for both architectures. Overall, the modifications focus on versioning and dependency updates without altering the structure or logic of the meta.yaml file.

Possibly related PRs

• Update zol to 1.5.0 #51673: Updates the zol package from version 1.4.12 to 1.5.0, related to the current PR's version update.
• Update zol to 1.5.1 #51772: Updates the zol package from version 1.5.0 to 1.5.1, directly preceding the current update.
• Update zol to 1.5.2 #52051: Updates the zol package from version 1.5.1 to 1.5.2, which is the immediate predecessor to the current version update.

Suggested reviewers

• raufs

---

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between 5c572ed and 3a0e987.

📒 Files selected for processing (1)

• recipes/zol/meta.yaml (2 hunks)

🔇 Additional comments (4)

recipes/zol/meta.yaml (4)

2-2: LGTM: Version update is consistent

The version update to 1.5.3 matches the PR objectives and follows semantic versioning.

---

Line range hint 1-85: Overall changes look good

The version bump and dependency updates are well-structured and follow Bioconda's best practices. The changes are minimal and focused on the necessary updates for the new version.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

55-56: Verify miniprot version compatibility and availability

The miniprot version requirement has been significantly updated from 0.7 to 0.13. Let's verify:

1. Availability of version 0.13 in Bioconda
2. Compatibility with both architectures
3. Any breaking changes between versions

#!/bin/bash
# Description: Verify miniprot version availability and compatibility

# Check if miniprot 0.13 is available in Bioconda
echo "Checking miniprot availability in Bioconda..."
curl -s "https://conda.anaconda.org/bioconda/linux-64/repodata.json" | jq '.packages | to_entries[] | select(.value.name=="miniprot") | .value.version'
curl -s "https://conda.anaconda.org/bioconda/linux-aarch64/repodata.json" | jq '.packages | to_entries[] | select(.value.name=="miniprot") | .value.version'

# Check for any related issues or discussions
echo "Checking for related issues..."
gh search issues "repo:bioconda/bioconda-recipes miniprot 0.13" --json title,url,state

---

10-10: Verify SHA256 checksum authenticity

Let's verify that the SHA256 checksum matches the source tarball from the GitHub release.

---

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

• Review comments: Directly reply to a review comment made by CodeRabbit. Example:
  • I pushed a fix in commit <commit_id>, please review it.
  • Generate unit testing code for this file.
  • Open a follow-up GitHub issue for this discussion.
• Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
  • @coderabbitai generate unit testing code for this file.
  • @coderabbitai modularize this function.
• PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
  • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
  • @coderabbitai read src/utils.ts and generate unit testing code.
  • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
  • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

• @coderabbitai pause to pause the reviews on a PR.
• @coderabbitai resume to resume the paused reviews.
• @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
• @coderabbitai full review to do a full review from scratch and review all the files again.
• @coderabbitai summary to regenerate the summary of the PR.
• @coderabbitai resolve resolve all the CodeRabbit review comments.
• @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
• @coderabbitai help to get help.

Other keywords and placeholders

• Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
• Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
• Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

• You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
• Please see the configuration documentation for more information.
• If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

• Visit our Documentation for detailed information on how to use CodeRabbit.
• Join our Discord Community to get help, request features, and share feedback.
• Follow us on X/Twitter for updates and announcements.