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Update piret dependencies #15450

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Update piret dependencies #15450

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692f085
mac recipe and added bioperl
mshakya Jul 26, 2018
9cf0dd4
changing bill number
mshakya Jul 26, 2018
8dadb0d
Merge branch 'master' into phame
mshakya Sep 6, 2018
014285f
added no osx
mshakya Sep 9, 2018
39ad789
adding new version
mshakya Sep 9, 2018
e19b1ec
removed separate recipe for mac, dont need it
mshakya Sep 9, 2018
8d1756a
now running same recipe for mac and linux
mshakya Sep 9, 2018
2136863
fixed the way fasttrees version was being parsed
mshakya Sep 12, 2018
6bcbf8b
Merge branch 'master' into phame
mshakya Sep 12, 2018
4fe81b7
Merge pull request #1 from mshakya/phame
mshakya Sep 12, 2018
2cdfb07
minor change test
mshakya Sep 12, 2018
4b0629a
adding detailed description
mshakya Sep 12, 2018
829ce08
restaging the build number
mshakya Sep 13, 2018
1d55d74
Merge pull request #2 from mshakya/phame
mshakya Sep 13, 2018
c54efb6
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
mshakya Sep 13, 2018
6784350
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes…
mshakya Oct 4, 2018
adde044
new version
mshakya Oct 4, 2018
c60ad6c
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes…
mshakya Oct 4, 2018
e6503cf
Make sure to use bioperl and perl 5.26
druvus Oct 5, 2018
28b2e6c
Merge pull request #3 from mshakya/phame
mshakya Oct 5, 2018
c5fc103
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
mshakya Oct 5, 2018
73fcac8
updating version and adding iqtree
mshakya Oct 10, 2018
19083ab
updating version
mshakya Oct 10, 2018
8b2ddbc
reversing changes to resolve conflicts
mshakya Oct 11, 2018
ec6f934
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
mshakya Oct 11, 2018
c86651f
Merge branch 'phame' of https://github.com/mshakya/bioconda-recipes i…
mshakya Oct 11, 2018
a1e48c8
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
mshakya Oct 26, 2018
fe17b36
Merge branch 'master' into phame
mshakya Oct 26, 2018
c1e970e
new piret recipe
mshakya Oct 26, 2018
9948f45
changed name
mshakya Oct 26, 2018
ff48638
shasum number
mshakya Oct 26, 2018
209b6d4
now using python install
mshakya Oct 26, 2018
0e15fe8
now testing from github
mshakya Oct 26, 2018
0d310a1
adding git_url
mshakya Oct 26, 2018
89fb4f7
skipping osx
mshakya Oct 26, 2018
4cfdb81
updating version
mshakya Oct 26, 2018
384bcf7
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
mshakya Jan 22, 2019
976ad59
Merge branch 'master' into piret
mshakya Jan 22, 2019
8387ce5
changing test
mshakya Jan 22, 2019
1b1f0f0
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
mshakya Jan 22, 2019
5029436
Merge branch 'master' into piret
mshakya Jan 22, 2019
aaeed21
adding pandas here
mshakya Jan 22, 2019
f8cba5a
moving packages from pip to conda
mshakya Jan 22, 2019
500109d
changed to new version
mshakya Jan 23, 2019
54daaee
new version
mshakya Jan 23, 2019
15c6679
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
mshakya Jan 23, 2019
16350b7
Merge branch 'master' into piret
mshakya Jan 23, 2019
b153fdb
Merge branch 'master' into master
mshakya May 17, 2019
0e24982
changing build #
mshakya May 17, 2019
72a8a0d
getting the correct build number
mshakya May 17, 2019
4ad5b7c
addeed version number for every dependencies
mshakya May 17, 2019
fd67521
making all requested changes
mshakya Jul 15, 2019
4d9ee86
updated version
mshakya Jul 15, 2019
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4 changes: 2 additions & 2 deletions recipes/phame/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{% set name = "phame" %}
{% set version = "1.0.3" %}
{% set hash = "026b5c54ff9fe121fefd222dc2f9912da34a9395a04d26f7e468aca5adcd1703" %}
{% set version = "1.0.4" %}
{% set hash = "i288cca5787879aadf73918b34561ca9c6c0998bc423ed5c5af3ce2f882a5727d" %}

package:
name: {{ name }}
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14 changes: 6 additions & 8 deletions recipes/piret/meta.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,18 +12,16 @@ source:

build:
noarch: generic
number: 1
number: 2

requirements:
run:
- python
- samtools >=1.3.1
- bamtools >=2.4.0
- pandas >=0.23.4
- luigi
- argparse
- plumbum
- R
- argparse >=1.3.0
- R >=3.5.1
- hisat2 >=2.0.5
- stringtie >=1.3.3
- subread >=1.5.0
Expand All @@ -33,15 +31,15 @@ requirements:
- biopython >=1.7.0
- bioconductor-edger >=3.22.5
- bioconductor-deseq2 >=1.20.0

test:
commands:
- which piret

about:
home: https://github.com/mshakya/PyPiReT
home: https://github.com/mshakya/piret
license: GPLV2
summary: A tool for conducting RNA seq analysis.
summary: A workflow for RNA seq analysis.

extra:
identifiers:
Expand Down