try patching makefile

bioconda · Oct 16, 2024 · 97f06cb · 97f06cb
1 parent 7e3bde8
commit 97f06cb
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diff --git a/recipes/fmsi/0001-Makefile.patch b/recipes/fmsi/0001-Makefile.patch
@@ -0,0 +1,29 @@
+diff --git a/src/Makefile b/src/Makefile
+index 6272ad5..473407a 100644
+--- a/src/Makefile
++++ b/src/Makefile
+@@ -1,10 +1,10 @@
+ .PHONY: all clean 
+-CXX=									g++
+-CXXFLAGS=							-g -Wall -Wno-unused-function -std=c++17 -O2
+-PROG=									../fmsi
+-INCLUDES-PATH?=.
++CXX=									${CXX}
++CXXFLAGS=							-g -Wall -Wno-unused-function -std=c++17 -O3
++PROG=									${PREFIX}/bin/fmsi
++INCLUDES-PATH?=							${PREFIX}
+ INCLUDES=							-I$(INCLUDES-PATH)/include -L$(INCLUDES-PATH)/lib 
+-LIBS=									-lz -lsdsl -ldivsufsort -ldivsufsort64
++LIBS+=									-lz -lsdsl -ldivsufsort -ldivsufsort64 -L${PREFIX}/lib
+
+ all:$(PROG)
+
+@@ -14,7 +14,7 @@ include/sdsl/suffix_arrays.hpp: sdsl-lite/build/Makefile
+ 	$(MAKE) -C sdsl-lite/build install
+
+ sdsl-lite/build/Makefile:
+-	cd sdsl-lite/build && cmake -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_PREFIX=../.. ..
++	cd sdsl-lite/build && cmake -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_PREFIX=${PREFIX} ..
+
+
+ $(PROG): $(wildcard *.cpp *.c *.h) ./include/sdsl/suffix_arrays.hpp version.h
diff --git a/recipes/fmsi/0002-version.patch b/recipes/fmsi/0002-version.patch
@@ -0,0 +1,7 @@
+diff --git a/src/version b/src/version
+index ee1372d..abd4105 100644
+--- a/src/version
++++ b/src/version
+@@ -1 +1 @@
+-0.2.2
++${PKG_VERSION}
diff --git a/recipes/fmsi/meta.yaml b/recipes/fmsi/meta.yaml
@@ -8,6 +8,8 @@ package:
 source:
   url: https://github.com/OndrejSladky/fmsi/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
+    - 0001-Makefile.patch
+    - 0002-version.patch
 
 build:
   number: 0