gffcompare: change build.sh to use prep_linux.sh (#12407)

- this is solution suggested by the developer: gpertea/gclib#4
- removed gffcompare as developer suggested
- removed blacklist entry

build-fail-blacklist

@@ -410,9 +410,6 @@ recipes/rdkit/2016.03.3
 # broken pipe
 recipes/antarna
 
-#gff.h missing
-recipes/gffcompare
-
 # perl errors
 recipes/snvphyl-tools
 
@@ -711,7 +708,6 @@ recipes/edlib
 recipes/esimsa
 recipes/fastuniq
 recipes/fgap
-recipes/gclib
 recipes/funcannot
 recipes/genepender
 recipes/genometester4

recipes/gffcompare/build.sh

@@ -1,6 +1,22 @@
 #!/bin/bash
 
-mkdir -p $PREFIX/bin
-make
-install gffcompare $PREFIX/bin/
+# install gffcompare using the prep script of the 
+# distribution. note that this works for linux and mac
+# since the prep_mac script just uses different names
+# for the directories (all the magic happens in the 
+# Makefile)
+cd gffcompare
+./prep_linux.sh
 
+# in order to find the directory where the binaries 
+# are installed the version is extracted as in the 
+# prep script
+ver=$(fgrep '#define VERSION ' gffcompare.cpp)
+ver=${ver#*\"}
+ver=${ver%%\"*}
+cd gffcompare-"$ver"
+
+# copy binaries
+mkdir -p "$PREFIX"/bin/
+cp gffcompare "$PREFIX"/bin/
+cp trmap "$PREFIX"/bin/

recipes/gffcompare/meta.yaml

@@ -11,19 +11,16 @@ build:
   skip: False
 
 source:
-  url: https://github.com/gpertea/gffcompare/archive/v{{ version }}.tar.gz
-  sha256: {{ sha256hash }}
-  patches:
-    - Makefile.patch # [not osx]
-    - Makefile.osx.patch # [osx]
+  - url: https://github.com/gpertea/gffcompare/archive/v{{ version }}.tar.gz
+    sha256: {{ sha256hash }}
+    folder: gffcompare
+  - url: https://github.com/gpertea/gclib/archive/v0.10.3.tar.gz
+    sha256: f5f9d4764afe83d5b9cc851c4dab352906505be7a6c03958c2af51c554118c18
+    folder: gclib
 
 requirements:
   build:
-    - {{ compiler('c') }}
-  host:
-    - gclib
-  run:
-    - gclib
+    - {{ compiler('cxx') }}
 
 test:
   commands: