Skip to content

Commit

Permalink
[ci skip] Merge PR 21599
Browse files Browse the repository at this point in the history
Merge PR #21599, commits were: 
 * Update meta.yaml
 * Merge branch 'master' into pgcgap
 * Update PGCGAP to v1.0.11
 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap
 * canu>=1.8
 * Merge branch 'master' into pgcgap
 * Update meta.yaml
 * add modeltest-ng and raxml-ng
 * Merge branch 'master' into pgcgap
 * add circlator and unicycler
 * Merge branch 'master' into pgcgap
 * update pgcgap to v1.0.10
 * add abricate
 * Merge pull request #6 from liaochenlanruo/master

update pgcgap branch
 * Merge pull request #5 from bioconda/master

update local files
 * add gubbins 2.3.4
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * add gubbins 2.3.4
 * add gubbins
 * combination of roary and orthofinder
 * Update meta.yaml
 * Merge pull request #4 from liaochenlanruo/master

update local branch
 * Merge pull request #3 from bioconda/master

update local fork
 * Merge pull request #2 from bioconda/master

update fork
 * Update meta.yaml
 * Update meta.yaml
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

update local recipes
  • Loading branch information
Hualin Liu authored Apr 19, 2020
1 parent 127112d commit 73e3fe7
Show file tree
Hide file tree
Showing 2 changed files with 7 additions and 3 deletions.
1 change: 1 addition & 0 deletions recipes/pgcgap/build.sh
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@
mkdir -p $PREFIX/bin

cp pgcgap.pl $PREFIX/bin/pgcgap

cp Functions/Pan/plot_3Dpie.R $PREFIX/bin/
cp Functions/Pan/fmplot.py $PREFIX/bin/

Expand Down
9 changes: 6 additions & 3 deletions recipes/pgcgap/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
{% set name = "pgcgap" %}
{% set version = "1.0.14" %}
{% set version = "1.0.15" %}

package:
name: '{{ name }}'
version: '{{ version }}'

source:
url: https://github.com/liaochenlanruo/pgcgap/archive/v{{ version }}.tar.gz
sha256: 878c5ac616354293fc4342f9dca647ab046d11d3cf13500029b18e076ff933cf
sha256: 2ee95e87d3ca0dbe71ce974823ed0f4232a2d2255ebe1ceae0f84ca88b79dcb8

build:
number: 0
Expand All @@ -18,6 +18,7 @@ requirements:
- perl
- perl-bioperl >=1.7.2
- perl-file-tee
- perl-sys-info

run:
- abricate
Expand All @@ -43,13 +44,15 @@ requirements:
- muscle
- fastme >=2.1.5
- fastani >=1.1
- fastp
- pal2nal
- perl-file-tee
- perl-data-dumper >=2.173
- perl-pod-usage >=1.69
- perl-getopt-long >=2.50
- perl-parallel-forkmanager
- perl-posix
- perl-sys-info
- htslib >=1.9
- snippy >=4.3.6
- sickle-trim >=1.33
Expand All @@ -64,7 +67,7 @@ requirements:
- biopython
- r-pheatmap
- r-plotrix
- unicycler
- unicycler =0.4.7
- wget
- coreutils

Expand Down

0 comments on commit 73e3fe7

Please sign in to comment.