Merge remote-tracking branch 'origin/update_recipe_2' into update_rec…

…ipe_2
bioconda · Nov 2, 2024 · 1ce08d6 · 1ce08d6
2 parents 412457b + 5f34dbd
commit 1ce08d6
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Showing 6 changed files with 13 additions and 12 deletions.
diff --git a/recipes/fgbio-minimal/meta.yaml b/recipes/fgbio-minimal/meta.yaml
@@ -1,12 +1,12 @@
-{% set version = "2.3.0" %}
+{% set version = "2.4.0" %}
 
 package:
   name: fgbio-minimal
   version: {{ version }}
 
 source:
   url: https://github.com/fulcrumgenomics/fgbio/releases/download/{{ version }}/fgbio-{{ version }}.jar
-  sha256: a0748b52a92403d88e7cf799368c313a05f89c5e3da04f7f8829593a603b7c69
+  sha256: c8f4df9d6f4f34998e9f5d6f6533ca4fc87170247f7156d7d9705e25daee2937
 
 build:
   noarch: generic

diff --git a/recipes/kalamari/meta.yaml b/recipes/kalamari/meta.yaml
@@ -1,13 +1,13 @@
 {% set name = "Kalamari" %}
-{% set version = "5.7.1" %}
+{% set version = "5.7.2" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
   url: https://github.com/lskatz/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 41a70037424da3658e6c92e3faca335d4cf02301fc74a5b5b27cd2611aef5681
+  sha256: 9f206e8bb949961d2b0f4788dae0deb2941632237391ae04891ea77ef8f02d89
 
 build:
   number: 0

diff --git a/recipes/lotus2/build.sh b/recipes/lotus2/build.sh
@@ -1,10 +1,10 @@
 #!/bin/sh
 SHARE_DIR=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
 
-rm -rf bin/installs/ bin/LCA bin/rtk bin/sdm bin/vsearch configs/sdm_src/
+rm -rf bin/installs/ bin/lambda3* bin/LCA bin/rtk bin/sdm bin/vsearch
 # Configure LotuS2
 cp configs/LotuS.cfg.def lOTUs.cfg
-for binary in blastn clustalo lambda3 LCA mafft minimap2 rtk sdm swarm vsearch; do
+for binary in blastn clustalo lambda3 LCA mafft minimap2 rtk sdm swarm usearch vsearch; do
     sed -i.bak -e "s|^$binary[[:space:]].*|$binary $PREFIX/bin/$binary|" lOTUs.cfg
 done
 for binary in cd-hit fasttree hmmsearch iqtree itsx makeBlastDB RDPjar; do

diff --git a/recipes/lotus2/meta.yaml b/recipes/lotus2/meta.yaml
@@ -11,7 +11,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 0
+  number: 1
   noarch: generic
   run_exports:
     - {{ pin_subpackage(name, max_pin='x') }}

diff --git a/recipes/saccharis/meta.yaml b/recipes/saccharis/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "SACCHARIS" %}
 {% set version = "2.0.1.dev21" %}
-{% set hash = "B83DC6502A3AB136D1E5F43E4E66CD41A7B884C99B190B781691C56A6D71998F" %}
+{% set hash = "90806FDA7473C4687165277FB7765F201B2E3CE5254B43A0FBC8FBCD8C9B8849" %}
 
 
 package:
@@ -9,12 +9,13 @@ package:
 
 source:
   #  url: https://github.com/saccharis/SACCHARIS_2/releases/download/v{{ version }}/saccharis-{{ version }}.tar.gz
-  url: https://github.com/saccharis/SACCHARIS_2/releases/download/v2.0.1.dev21/saccharis-2.0.1.dev21_3.tar.gz
+  url: https://github.com/saccharis/SACCHARIS_2/releases/download/v2.0.1.dev21/saccharis-2.0.1.dev21_4.tar.gz
+
   sha256: {{ hash|lower }}
 
 build:
   noarch: python
-  number: 3
+  number: 4
   script: {{ PYTHON }} setup.py install --single-version-externally-managed --record=record.txt
   preserve_egg_dir: True  # added because the entry points below seem to be causing a build error
   entry_points:

diff --git a/recipes/snakemake/meta.yaml b/recipes/snakemake/meta.yaml
@@ -1,15 +1,15 @@
 # Attention: when upgrading the version, please compare below dependencies with
 # https://github.com/snakemake/snakemake/blob/{version}/setup.cfg
 {% set name = "snakemake" %}
-{% set version = "8.25.0" %}
+{% set version = "8.25.1" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://pypi.io/packages/source/s/{{ name }}/snakemake-{{ version }}.tar.gz
-  sha256: a9cf1ab8e7c33a6e928f191fc83572e8add8d8383465a036910526d01081bddc
+  sha256: c8f4442473f3af130f237fe5759ebfb03997b44e713cd7c479aba27d71338cd9
 
 build:
   number: 0