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New cut-adapters option integration

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@sagun98 sagun98 released this 28 May 00:06
· 9 commits to feature/cut-adapters since this release

Release Notes

New feature: --cut-adapters (optional)

Description: Runs the FASTQC report on the raw sequence and generates a custom.fa adapter file using the FASTQC report on overrepresented sequences. Finally, passes the custom.fa adapter file to trimmomatic to cut the adapters and overrepresented sequences.

Usage: kneaddata -i seq.fastq -db demo_db -o kneaddata_output --cut-adapters --fastqc FastQC

Dependency: FastQC