Implement new annonars model

bihealth · Apr 30, 2024 · e40eb12 · e40eb12
1 parent 419a94b
commit e40eb12
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Showing 7 changed files with 1,403 additions and 202 deletions.
diff --git a/.vscode/launch.json b/.vscode/launch.json
@@ -6,7 +6,7 @@
           "type": "debugpy",
           "request": "launch",
           "module": "src.cli",
-          "args": ["NM_000152.4:c.1A>G", "--genome-release", "grch38"],
+          "args": ["NM_000314.6:c.1134_1135insCTGG", "--genome-release", "grch37"],
           "console": "integratedTerminal"
       }
   ]

diff --git a/src/api/annonars.py b/src/api/annonars.py
@@ -42,6 +42,9 @@ def get_variant_from_range(
             response.raise_for_status()
             return AnnonarsRangeResponse.model_validate(response.json())
         except requests.RequestException:
+            print(f"Annonars API request failed: {url}")
             return None
         except ValidationError as e:
+            print(f"Validation error: {e}")
+            print(response.json(), file=open("ann.json", "w"))
             return None