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[ADAM-583] Add k-mer counting functionality for nucleotide contig fragments #584

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merged 1 commit into from
Feb 23, 2015

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fnothaft
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Resolves #583. This steals some code from bigdatagenomics/avocado#127 that adds flanking sequence to adjacent fragments. Without adding the adjacent sequence, we won't get correct values.

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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/606/
Test PASSed.

massie added a commit that referenced this pull request Feb 23, 2015
[ADAM-583] Add k-mer counting functionality for nucleotide contig fragments
@massie massie merged commit 293407f into bigdatagenomics:master Feb 23, 2015
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massie commented Feb 23, 2015

Thanks, Frank!

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Add support for counting k-mers from contigs
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