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quieting wget output #521

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Dec 15, 2014
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6 changes: 3 additions & 3 deletions scripts/jenkins-test
Original file line number Diff line number Diff line change
Expand Up @@ -27,11 +27,11 @@ export SPARK_DRIVER_MEMORY=8g
pushd "$ADAM_TMP_DIR"

if [[ $HADOOP_VERSION == "1.0.4" ]]; then
wget http://d3kbcqa49mib13.cloudfront.net/spark-1.1.0-bin-hadoop1.tgz
wget -q http://d3kbcqa49mib13.cloudfront.net/spark-1.1.0-bin-hadoop1.tgz
tar xzvf spark-1.1.0-bin-hadoop1.tgz
export SPARK_HOME="${ADAM_TMP_DIR}/spark-1.1.0-bin-hadoop1"
else
wget http://d3kbcqa49mib13.cloudfront.net/spark-1.1.0-bin-hadoop2.3.tgz
wget -q http://d3kbcqa49mib13.cloudfront.net/spark-1.1.0-bin-hadoop2.3.tgz
tar xzvf spark-1.1.0-bin-hadoop2.3.tgz
export SPARK_HOME="${ADAM_TMP_DIR}/spark-1.1.0-bin-hadoop2.3"
fi
Expand All @@ -43,7 +43,7 @@ BAM=mouse_chrM.bam
READS="$BAM".reads
PILEUPS="$BAM".pileup
rm -rf "$BAM"
wget https://s3.amazonaws.com/bdgenomics-test/"$BAM"
wget -q https://s3.amazonaws.com/bdgenomics-test/"$BAM"
echo "Converting BAM to ADAM read format"
rm -rf "$READS"
"$ADAM" bam2adam -samtools_validation lenient "$BAM" "$READS"
Expand Down