Add ADAMContext/GenomicRDD/pipe docs

README.md

@@ -370,3 +370,40 @@ ADAM is released under an [Apache 2.0 license](LICENSE.txt).
 [Spark]: https://spark.apache.org/
 [Parquet]: https://parquet.apache.org/
 [releases]: https://github.com/bigdatagenomics/adam/releases
+
+# Citing ADAM
+
+ADAM has been described in two manuscripts. The first, [a tech
+report](https://www2.eecs.berkeley.edu/Pubs/TechRpts/2013/EECS-2013-207.pdf),
+came out in 2013 and described the rationale behind using schemas for genomics,
+and presented an early implementation of some of the preprocessing algorithms.
+To cite this paper, please cite:
+
+```
+@techreport{massie13,
+  title={{ADAM}: Genomics Formats and Processing Patterns for Cloud Scale Computing},
+  author={Massie, Matt and Nothaft, Frank and Hartl, Christopher and Kozanitis, Christos and Schumacher, Andr{\'e} and Joseph, Anthony D and Patterson, David A},
+  year={2013},
+  institution={UCB/EECS-2013-207, EECS Department, University of California, Berkeley}
+}
+```
+
+The second, [a conference paper](http://dl.acm.org/ft_gateway.cfm?ftid=1586788&id=2742787),
+appeared in the SIGMOD 2015 Industrial Track. This paper described how ADAM's
+design was influenced by database systems, expanded upon the concept of a stack
+architecture for scientific analyses, presented more results comparing ADAM to
+state-of-the-art single node genomics tools, and demonstrated how the
+architecture generalized beyond genomics. To cite this paper, please cite:
+
+```
+@inproceedings{nothaft15,
+  title={Rethinking Data-Intensive Science Using Scalable Analytics Systems},
+  author={Nothaft, Frank A and Massie, Matt and Danford, Timothy and Zhang, Zhao and Laserson, Uri and Yeksigian, Carl and Kottalam, Jey and Ahuja, Arun and Hammerbacher, Jeff and Linderman, Michael and Franklin, Michael and Joseph, Anthony D. and Patterson, David A.},
+  booktitle={Proceedings of the 2015 International Conference on Management of Data (SIGMOD '15)},
+  year={2015},
+  organization={ACM}
+}
+```
+
+We prefer that you cite both papers, but if you can only cite one paper, we
+prefer that you cite the SIGMOD 2015 manuscript.