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Expose FeatureRDD to public #1275

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merged 1 commit into from
Nov 17, 2016
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Expose FeatureRDD to public #1275

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10 changes: 5 additions & 5 deletions adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
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Original file line number Diff line number Diff line change
Expand Up @@ -72,7 +72,7 @@ private trait FeatureOrdering[T <: Feature] extends Ordering[T] {
}
private object FeatureOrdering extends FeatureOrdering[Feature] {}

private[rdd] object FeatureRDD {
object FeatureRDD {

/**
* @param elem The feature to extract a sequence record from.
Expand Down Expand Up @@ -128,7 +128,7 @@ private[rdd] object FeatureRDD {
* @param feature Feature to write in IntervalList format.
* @return Feature as a one line interval list string.
*/
def toInterval(feature: Feature): String = {
private[rdd] def toInterval(feature: Feature): String = {
val sequenceName = feature.getContigName
val start = feature.getStart + 1 // IntervalList ranges are 1-based
val end = feature.getEnd // IntervalList ranges are closed
Expand All @@ -141,7 +141,7 @@ private[rdd] object FeatureRDD {
* @param feature Feature to write in the narrow peak format.
* @return Returns this feature as a single narrow peak line.
*/
def toNarrowPeak(feature: Feature): String = {
private[rdd] def toNarrowPeak(feature: Feature): String = {
val chrom = feature.getContigName
val start = feature.getStart
val end = feature.getEnd
Expand All @@ -159,7 +159,7 @@ private[rdd] object FeatureRDD {
* @param feature Feature to write in BED format.
* @return Returns the feature as a single line BED string.
*/
def toBed(feature: Feature): String = {
private[rdd] def toBed(feature: Feature): String = {
val chrom = feature.getContigName
val start = feature.getStart
val end = feature.getEnd
Expand All @@ -186,7 +186,7 @@ private[rdd] object FeatureRDD {
* @param feature Feature to write in GFF3 format.
* @return Returns this feature as a single line GFF3 string.
*/
def toGff3(feature: Feature): String = {
private[rdd] def toGff3(feature: Feature): String = {
def escape(entry: (Any, Any)): String = {
entry._1 + "=" + entry._2
}
Expand Down