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[ENH] Storing basic provenance on JSON sidecars of derivatives #300

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[ENH] Storing basic provenance on JSON sidecars of derivatives #300

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ENH: Upstream common-derivatives additional (optional) reserved JSON …
oesteban Aug 13, 2019
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sty: make linter happy
oesteban Aug 13, 2019
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15 changes: 12 additions & 3 deletions src/05-derivatives/02-common-data-types.md
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Expand Up @@ -62,9 +62,18 @@ makes them invalid (e.g., if a source 4D image is averaged to create a single
static volume, a SamplingFrequency property would no longer be relevant). In
addition, all processed files include the following metadata JSON fields:

| **Key name** | **Description** |
| ------------- | ----------------------------------------------------------------------------------------------- |
| SkullStripped | REQUIRED. Boolean. Whether the volume was skull stripped (non-brain voxels set to zero) or not. |
| **Key name** | **Description** |
| ---------------------------------------| ------------------------------------------------------------------------------------------------------------------------------------------------- |
| SkullStripped | REQUIRED. Boolean. Whether the volume was skull stripped (non-brain voxels set to zero) or not. |
| Denoising | OPTIONAL. String. Denoising method |
| GibbsRingingCorrection | OPTIONAL. Boolean. Removal of Gibbs ringing artifacts |
| MotionCorrection | OPTIONAL. String. Motion correction; allowed values: `none`, `volume`, `slice` |
| EddyCurrentCorrection | OPTIONAL. String. Eddy current distortion correction; reserved values: `none`, `linear`, `quadratic`, `cubic` |
| IntensityNormalizationMethod | OPTIONAL. String. Method (if any) used for intensity normalization |
| SusceptibilityDistortionEstimation | OPTIONAL. String. Method (if any) used for estimation of the B0 inhomogeneity field; reserved values: `multiecho`, `phaseencode`, `registration` |
| SusceptibilityDistortionCorrection | OPTIONAL. String. Correction for geometric distortions arising from B0 magnetic field inhomogeneity; reserved values: `none`, `static`, `dynamic` |
| GradientNonLinearityGeometryCorrection | OPTIONAL. Boolean. Correction for geometric distortions arising from non-linearity of gradients |
| BiasFieldCorrectionMethod | OPTIONAL. String. Method (if any) used for correction of B1 RF field inhomogeneity |

## Masks

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