Merge pull request #1074 from effigies/name-tables

SCHEMA: Convert datatype lists to objects
bids-standard · Apr 14, 2022 · 5fcde7b · 5fcde7b
2 parents a022462 + 24c0aa4
commit 5fcde7b
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Showing 12 changed files with 120 additions and 109 deletions.
diff --git a/src/schema/rules/datatypes/anat.yaml b/src/schema/rules/datatypes/anat.yaml
@@ -1,6 +1,6 @@
 ---
-# Nonparametric
-- suffixes:
+nonparametric:
+  suffixes:
   - T1w
   - T2w
   - PDw
@@ -28,8 +28,8 @@
     reconstruction: optional
     part: optional
 
-# Parametric
-- suffixes:
+parametric:
+  suffixes:
   - T1map
   - T2map
   - T2starmap
@@ -61,8 +61,8 @@
     ceagent: optional
     reconstruction: optional
 
-# Defacemask
-- suffixes:
+defacemask:
+  suffixes:
   - defacemask
   extensions:
   - .nii.gz
@@ -79,8 +79,8 @@
     reconstruction: optional
     modality: optional
 
-# Multi-echo
-- suffixes:
+multiecho:
+  suffixes:
   - MESE
   - MEGRE
   extensions:
@@ -99,8 +99,8 @@
     echo: required
     part: optional
 
-# Multi-flip
-- suffixes:
+multiflip:
+  suffixes:
   - VFA
   extensions:
   - .nii.gz
@@ -119,8 +119,8 @@
     flip: required
     part: optional
 
-# Multi-inv
-- suffixes:
+multiinversion:
+  suffixes:
   - IRT1
   extensions:
   - .nii.gz
@@ -138,8 +138,8 @@
     inversion: required
     part: optional
 
-# MP2RAGE
-- suffixes:
+mp2rage:
+  suffixes:
   - MP2RAGE
   extensions:
   - .nii.gz
@@ -159,8 +159,8 @@
     inversion: required
     part: optional
 
-# VFA+MT
-- suffixes:
+vfamt:
+  suffixes:
   - MPM
   - MTS
   extensions:
@@ -181,8 +181,8 @@
     mtransfer: required
     part: optional
 
-# MTR
-- suffixes:
+mtr:
+  suffixes:
   - MTR
   extensions:
   - .nii.gz

diff --git a/src/schema/rules/datatypes/beh.yaml b/src/schema/rules/datatypes/beh.yaml
@@ -1,6 +1,6 @@
 ---
-# Continuous data
-- suffixes:
+timeseries:
+  suffixes:
   - stim
   - physio
   extensions:
@@ -17,7 +17,8 @@
     recording: optional
 
 # Non-continuous data
-- suffixes:
+noncontinuous:
+  suffixes:
   - events
   - beh
   extensions:

diff --git a/src/schema/rules/datatypes/dwi.yaml b/src/schema/rules/datatypes/dwi.yaml
@@ -1,6 +1,6 @@
 ---
-# DWI
-- suffixes:
+dwi:
+  suffixes:
   - dwi
   extensions:
   - .nii.gz
@@ -18,8 +18,8 @@
     run: optional
     part: optional
 
-# Single-band reference images
-- suffixes:
+sbref:
+  suffixes:
   - sbref
   extensions:
   - .nii.gz
@@ -35,8 +35,8 @@
     run: optional
     part: optional
 
-# Timeseries
-- suffixes:
+timeseries:
+  suffixes:
   - physio
   - stim
   extensions:

diff --git a/src/schema/rules/datatypes/eeg.yaml b/src/schema/rules/datatypes/eeg.yaml
@@ -1,5 +1,6 @@
 ---
-- suffixes:
+eeg:
+  suffixes:
   - eeg
   extensions:
   - .json
@@ -19,7 +20,8 @@
     acquisition: optional
     run: optional
 
-- suffixes:
+channels:
+  suffixes:
   - channels
   extensions:
   - .json
@@ -33,7 +35,8 @@
     acquisition: optional
     run: optional
 
-- suffixes:
+coordsystem:
+  suffixes:
   - coordsystem
   extensions:
   - .json
@@ -45,7 +48,8 @@
     acquisition: optional
     space: optional
 
-- suffixes:
+electrodes:
+  suffixes:
   - electrodes
   extensions:
   - .json
@@ -58,7 +62,8 @@
     acquisition: optional
     space: optional
 
-- suffixes:
+events:
+  suffixes:
   - events
   extensions:
   - .json
@@ -72,7 +77,8 @@
     acquisition: optional
     run: optional
 
-- suffixes:
+photo:
+  suffixes:
   - photo
   extensions:
   - .jpg
@@ -83,8 +89,8 @@
     session: optional
     acquisition: optional
 
-# Timeseries
-- suffixes:
+timeseries:
+  suffixes:
   - physio
   - stim
   extensions:

diff --git a/src/schema/rules/datatypes/fmap.yaml b/src/schema/rules/datatypes/fmap.yaml
@@ -1,6 +1,6 @@
 ---
-# Fieldmaps
-- suffixes:
+fieldmaps:
+  suffixes:
   - phasediff
   - phase1
   - phase2
@@ -20,8 +20,8 @@
     acquisition: optional
     run: optional
 
-# PEPolar
-- suffixes:
+pepolar:
+  suffixes:
   - epi
   - m0scan
   extensions:
@@ -38,8 +38,8 @@
     direction: required
     run: optional
 
-# TB1DAM
-- suffixes:
+TB1DAM:
+  suffixes:
   - TB1DAM
   extensions:
   - .nii.gz
@@ -58,8 +58,8 @@
     inversion: optional
     part: optional
 
-# TB1EPI
-- suffixes:
+TB1EPI:
+  suffixes:
   - TB1EPI
   extensions:
   - .nii.gz
@@ -79,8 +79,8 @@
     inversion: optional
     part: optional
 
-# RFFieldMaps
-- suffixes:
+RFFieldMaps:
+  suffixes:
   - TB1AFI
   - TB1TFL
   - TB1RFM
@@ -103,8 +103,8 @@
     inversion: optional
     part: optional
 
-# TB1SRGE
-- suffixes:
+TB1SRGE:
+  suffixes:
   - TB1SRGE
   extensions:
   - .nii.gz
@@ -124,8 +124,8 @@
     inversion: required
     part: optional
 
-# Parametric
-- suffixes:
+parametric:
+  suffixes:
   - TB1map
   - RB1map
   extensions:

diff --git a/src/schema/rules/datatypes/func.yaml b/src/schema/rules/datatypes/func.yaml
@@ -1,6 +1,6 @@
 ---
-# Func
-- suffixes:
+func:
+  suffixes:
   - bold
   - cbv
   - sbref
@@ -22,8 +22,8 @@
     echo: optional
     part: optional
 
-# Phase (deprecated)
-- suffixes:
+phase:
+  suffixes:
   - phase  # deprecated
   extensions:
   - .nii.gz
@@ -42,8 +42,8 @@
     run: optional
     echo: optional
 
-# Events
-- suffixes:
+events:
+  suffixes:
   - events
   extensions:
   - .tsv
@@ -60,8 +60,8 @@
     direction: optional
     run: optional
 
-# Timeseries
-- suffixes:
+timeseries:
+  suffixes:
   - physio
   - stim
   extensions: