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Merge pull request #402 from Remi-Gau/res_in_derivative
[FIX] Add resolution metadata in derivative
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,15 @@ | ||
| """Add resolution metadata if json filename contains the res entity.""" | ||
| import json | ||
| from pathlib import Path | ||
| from rich import print | ||
|
|
||
| root = Path(__file__).parent.parent | ||
|
|
||
| files_to_update = root.glob("sub-*/*/sub*res-2*.json") | ||
|
|
||
| for event in files_to_update: | ||
| with open(event) as f: | ||
| metadata = json.load(f) | ||
| metadata["Resolution"] = "2mm, isotropic" | ||
| with open(event, "w") as f: | ||
| json.dump(metadata, f, indent=2) |
3 changes: 2 additions & 1 deletion
3
ds000001-fmriprep/sub-10/anat/sub-10_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,5 @@ | ||
| { | ||
| "RawSources": "tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz", | ||
| "Type": "Brain" | ||
| "Type": "Brain", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
5 changes: 3 additions & 2 deletions
5
ds000001-fmriprep/sub-10/anat/sub-10_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,4 @@ | ||
| { | ||
| "SkullStripped": true | ||
| } | ||
| "SkullStripped": true, | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...-10_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RawSources": [ | ||
| "sub-10/func/sub-10_task-balloonanalogrisktask_run-01_bold.nii.gz" | ||
| ] | ||
| ], | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...0_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RepetitionTime": 2.0, | ||
| "SkullStripped": false, | ||
| "TaskName": "balloon analog risk task" | ||
| "TaskName": "balloon analog risk task", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...-10_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RawSources": [ | ||
| "sub-10/func/sub-10_task-balloonanalogrisktask_run-02_bold.nii.gz" | ||
| ] | ||
| ], | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...0_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RepetitionTime": 2.0, | ||
| "SkullStripped": false, | ||
| "TaskName": "balloon analog risk task" | ||
| "TaskName": "balloon analog risk task", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...-10_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RawSources": [ | ||
| "sub-10/func/sub-10_task-balloonanalogrisktask_run-03_bold.nii.gz" | ||
| ] | ||
| ], | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...0_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RepetitionTime": 2.0, | ||
| "SkullStripped": false, | ||
| "TaskName": "balloon analog risk task" | ||
| "TaskName": "balloon analog risk task", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
ds000001-fmriprep/sub-11/anat/sub-11_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,5 @@ | ||
| { | ||
| "RawSources": "tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz", | ||
| "Type": "Brain" | ||
| "Type": "Brain", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
5 changes: 3 additions & 2 deletions
5
ds000001-fmriprep/sub-11/anat/sub-11_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,4 @@ | ||
| { | ||
| "SkullStripped": true | ||
| } | ||
| "SkullStripped": true, | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...-11_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RawSources": [ | ||
| "sub-11/func/sub-11_task-balloonanalogrisktask_run-01_bold.nii.gz" | ||
| ] | ||
| ], | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...1_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RepetitionTime": 2.0, | ||
| "SkullStripped": false, | ||
| "TaskName": "balloon analog risk task" | ||
| "TaskName": "balloon analog risk task", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...-11_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RawSources": [ | ||
| "sub-11/func/sub-11_task-balloonanalogrisktask_run-02_bold.nii.gz" | ||
| ] | ||
| ], | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...1_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RepetitionTime": 2.0, | ||
| "SkullStripped": false, | ||
| "TaskName": "balloon analog risk task" | ||
| "TaskName": "balloon analog risk task", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...-11_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RawSources": [ | ||
| "sub-11/func/sub-11_task-balloonanalogrisktask_run-03_bold.nii.gz" | ||
| ] | ||
| ], | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...1_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RepetitionTime": 2.0, | ||
| "SkullStripped": false, | ||
| "TaskName": "balloon analog risk task" | ||
| "TaskName": "balloon analog risk task", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
ds000001-fmriprep/sub-13/anat/sub-13_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,5 @@ | ||
| { | ||
| "RawSources": "tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz", | ||
| "Type": "Brain" | ||
| "Type": "Brain", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
5 changes: 3 additions & 2 deletions
5
ds000001-fmriprep/sub-13/anat/sub-13_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,4 @@ | ||
| { | ||
| "SkullStripped": true | ||
| } | ||
| "SkullStripped": true, | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...-13_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RawSources": [ | ||
| "sub-13/func/sub-13_task-balloonanalogrisktask_run-01_bold.nii.gz" | ||
| ] | ||
| ], | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...3_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RepetitionTime": 2.0, | ||
| "SkullStripped": false, | ||
| "TaskName": "balloon analog risk task" | ||
| "TaskName": "balloon analog risk task", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...-13_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RawSources": [ | ||
| "sub-13/func/sub-13_task-balloonanalogrisktask_run-02_bold.nii.gz" | ||
| ] | ||
| ], | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...3_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RepetitionTime": 2.0, | ||
| "SkullStripped": false, | ||
| "TaskName": "balloon analog risk task" | ||
| "TaskName": "balloon analog risk task", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...-13_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RawSources": [ | ||
| "sub-13/func/sub-13_task-balloonanalogrisktask_run-03_bold.nii.gz" | ||
| ] | ||
| ], | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...3_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RepetitionTime": 2.0, | ||
| "SkullStripped": false, | ||
| "TaskName": "balloon analog risk task" | ||
| "TaskName": "balloon analog risk task", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
ds000001-fmriprep/sub-16/anat/sub-16_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,5 @@ | ||
| { | ||
| "RawSources": "tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz", | ||
| "Type": "Brain" | ||
| "Type": "Brain", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
5 changes: 3 additions & 2 deletions
5
ds000001-fmriprep/sub-16/anat/sub-16_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,4 @@ | ||
| { | ||
| "SkullStripped": true | ||
| } | ||
| "SkullStripped": true, | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...-16_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RawSources": [ | ||
| "sub-16/func/sub-16_task-balloonanalogrisktask_run-01_bold.nii.gz" | ||
| ] | ||
| ], | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...6_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RepetitionTime": 2.0, | ||
| "SkullStripped": false, | ||
| "TaskName": "balloon analog risk task" | ||
| "TaskName": "balloon analog risk task", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...-16_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RawSources": [ | ||
| "sub-16/func/sub-16_task-balloonanalogrisktask_run-02_bold.nii.gz" | ||
| ] | ||
| ], | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...6_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RepetitionTime": 2.0, | ||
| "SkullStripped": false, | ||
| "TaskName": "balloon analog risk task" | ||
| "TaskName": "balloon analog risk task", | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...-16_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RawSources": [ | ||
| "sub-16/func/sub-16_task-balloonanalogrisktask_run-03_bold.nii.gz" | ||
| ] | ||
| ], | ||
| "Resolution": "2mm, isotropic" | ||
| } |
3 changes: 2 additions & 1 deletion
3
...6_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,6 @@ | ||
| { | ||
| "RepetitionTime": 2.0, | ||
| "SkullStripped": false, | ||
| "TaskName": "balloon analog risk task" | ||
| "TaskName": "balloon analog risk task", | ||
| "Resolution": "2mm, isotropic" | ||
| } |