fix: pipeline entry no longer needs to manually configure loglevel

src/imgtools/autopipeline.py

@@ -15,7 +15,7 @@
 from imgtools.pipeline import Pipeline
 from imgtools.utils.nnunet import generate_dataset_json, markdown_report_images
 from imgtools.utils.args import parser
-from imgtools.logging import get_logger
+from imgtools.logging import logger
 
 from joblib import Parallel, delayed
 from imgtools.modules import Segmentation
@@ -28,9 +28,6 @@
 ###############################################################
 
 
-logger = get_logger(level=os.environ.get('IMGTOOLS_LOG_LEVEL', "INFO"))
-
-
 class AutoPipeline(Pipeline):
     """Example processing pipeline for the RADCURE dataset.
     This pipeline loads the CT images and structure sets, re-samples the images,