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lint fixes for various tools #107

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FOR CONTRIBUTOR:

  • I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • License permits unrestricted use (educational + commercial)
  • This PR adds a new tool or tool collection
  • This PR updates an existing tool or tool collection
  • This PR does something else (explain below)

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@bernt-matthias bernt-matthias left a comment

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Can we remove XMLOrder now in all .lint_skip file?

Fine after vacation :)

tools/abricate/abricate_list.xml Outdated Show resolved Hide resolved
@@ -52,24 +52,24 @@
</outputs>

<tests>
<test><!-- Test 1 -->
<test expect_num_outputs="1"><!-- Test 1 -->
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Guess we can remove a linter rule from the skip file.

We should bump and deploy this one (so maybe better put in a separate PR)?

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Not sure a deployment is needed here? I would not deploy for a stricter test. Please feel free to merge and take it from here.

Co-authored-by: M Bernt <m.bernt@ufz.de>
@bgruening
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@bernt-matthias what do you want me to do with this one?

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Can you open a PR against IUC/main?

<expand macro="requirements" />
<expand macro="version_command" />

<expand macro="edam_ontology"/>
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If we fix a linter error we should remove it from the tool's .lint_skip file.

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abcriacte didn't had a lint_skip file imho

@bgruening bgruening closed this Sep 10, 2024
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2 participants