lint fixes for various tools #1338

Job	Run time
Setup cache and determine changed repositories (3.11)	4m 56s
Lint tool-list (3.11)	3m 42s
Check file sizes	1m 0s
Lint Python scripts (3.11)	34s
Lint R scripts (ubuntu-20.04, release)	3m 33s
Test tools (0, 3.11)	13m 25s
Test tools (1, 3.11)	15m 44s
Test tools (2, 3.11)	8m 39s
Test tools (3, 3.11)	12m 14s
Combine chunked test results (3.11)	40s
Check workflow success	1s
Deploy	0s
Report deploy status	0s
	1h 4m 28s

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