New style tests closes mdolab#44 (mdolab#47)

Co-authored-by: Josh Anibal <joanibal@umich.edu>
Co-authored-by: Josh Anibal <joanibal+github@umich.edu>

.travis.yml

@@ -9,13 +9,13 @@ env:
     - DOCKER_REPO=public
 
 install:
-  - docker exec -it app /bin/bash -c ". $BASHRC && cd $DOCKER_WORKING_DIR && pip install ."
+  - docker exec -it app /bin/bash -c ". $BASHRC && cd $DOCKER_WORKING_DIR && pip install .[testing] "
 
 script:
   - |
     if [[ "$TEST_TYPE" == "docker" ]]; then
     # run tests
-      docker exec -it app /bin/bash -c ". $BASHRC && cd $DOCKER_WORKING_DIR/reg_tests && python run_reg_tests.py -nodiff"
+      docker exec -it app /bin/bash -c ". $BASHRC && cd $DOCKER_WORKING_DIR/tests && testflo . -v -n 1"
     fi
 
 after_script:

pygeo/DVConstraints.py

@@ -1412,7 +1412,7 @@ def addCompositeVolumeConstraint(self, vols, lower=1.0, upper=3.0,
         volCons = []
         for vol in vols:
             try:
-                volCons.append(self.volumeCon[vol])
+                volCons.append(self.constraints[typeName][vol])
             except KeyError:
                 raise Error("The supplied volume name '%s' has not"
                             " already been added with a call to "
@@ -2047,7 +2047,7 @@ def addProjectedAreaConstraint(self, axis='y', lower=1.0, upper=3.0, scaled=True
 
         # Create a name
         if name is None:
-            conName = 'projectedArea_constraints_%d'% len(self.constraints[typeName])
+            conName = '%s_projectedArea_constraints_%d'%(self.name, len(self.constraints[typeName]))
         else:
             conName = name
         self.constraints[typeName][conName] = ProjectedAreaConstraint(
@@ -2138,10 +2138,10 @@ def addColinearityConstraint(self, origin, lineAxis, distances,
         Parameters
         ----------
         origin: vector
-              The coordinate of the origin
+              The coordinate of the origin (3x numpy array)
 
         lineAxis: vector
-              The line of colinearity
+              The line of colinearity (3x numpy array)
 
         distances: list
               List of distances from origin to constrain

pygeo/DVGeometry.py

@@ -2980,9 +2980,11 @@ def _sectionlocalDVJacobian(self, config=None):
                         inFrame[dv.axis] = 1.0
 
                         R = numpy.real(self.coefRotM[coef])
-                        rows = range(coef*3,(coef+1)*3)
-                        Jacobian[rows, iDVSectionLocal] += R.dot(T.dot(inFrame))
-
+                        # this is a bug fix for scipy 1.3+ related to fancy indexing
+                        # the original was:
+                        # rows = range(coef*3,(coef+1)*3)
+                        # Jacobian[rows, iDVSectionLocal] += R.dot(T.dot(inFrame))
+                        Jacobian[coef*3:(coef+1)*3, iDVSectionLocal] += R.dot(T.dot(inFrame))
                         for iChild in range(len(self.children)):
 
                             dXrefdCoef = self.FFD.embededVolumes['child%d_axis'%(iChild)].dPtdCoef