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Add Ziwei, mention PyPI, remove independence of submodules statement, as it is no longer correct
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juliusge authored Jan 31, 2025
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Expand Up @@ -15,6 +15,10 @@ authors:
orcid: 0009-0007-7286-0017
equal-contrib: false
affiliation: 1
- name: Ziwei Huang
orcid: 0000-0001-7517-0395
equal-contrib: false
affiliation: 1
- name: Sarah Müller
orcid: 0000-0003-1500-8673
equal-contrib: false
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<!-- ![Fundus Image Toolbox Icon](../icon.svg) -->

# Summary
The Fundus Image Toolbox is an open source Python suite of tools for working with retinal fundus images. It includes quality prediction, fovea and optic disc center localization, blood vessel segmentation, image registration, and fundus cropping functions. It also provides a collection of useful utilities for image manipulation and image-based PyTorch models. The toolbox is designed to be flexible and easy to use, thus helping to speed up research workflows. All tools can be installed as a whole or individually, depending on the user's needs. \autoref{fig:example} illustrates the main functionalities.
The Fundus Image Toolbox is an open source Python suite of tools for working with retinal fundus images. It includes quality prediction, fovea and optic disc center localization, blood vessel segmentation, image registration, and fundus cropping functions. It also provides a collection of useful utilities for image manipulation and image-based PyTorch models. The toolbox is designed to be flexible and easy to use, thus helping to speed up research workflows. It is available as a PyPI package. \autoref{fig:example} illustrates the main functionalities.
Find the toolbox at [https://github.com/berenslab/fundus_image_toolbox](https://github.com/berenslab/fundus_image_toolbox).

# Statement of need
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![Examples for main functionalities of the Fundus Image Toolbox. (a.) Fovea and optic disc localization. (b.) Quality prediction. (c.) Vessel segmentation. (d.) Registration.\label{fig:example}](fig3.pdf){ width=100% }

# Acknowledgements
We thank Ziwei Huang for reviewing the package and Murat Seçkin Ayhan for inspiring the development of the quality prediction model. This project was supported by the Hertie Foundation. JG received funding through the Else Kröner Medical Scientist Kolleg "ClinbrAIn: Artificial Intelligence for Clinical Brain Research”. The authors thank the International Max Planck Research School for Intelligent Systems (IMPRS-IS) for supporting SM.
We thank Murat Seçkin Ayhan for inspiring the development of the quality prediction model. This project was supported by the Hertie Foundation. JG received funding through the Else Kröner Medical Scientist Kolleg "ClinbrAIn: Artificial Intelligence for Clinical Brain Research”. The authors thank the International Max Planck Research School for Intelligent Systems (IMPRS-IS) for supporting SM.

# References

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