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@bedapub

BEDApub

Roche Pharma Research and Early Development, Pharmaceutical Sciences, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, Grenzacherstrasse 124, 4070 Basel

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  1. besca besca Public

    BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis

    Python 49 17

  2. splicekit splicekit Public

    splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq

    Python 15 4

  3. designit designit Public

    Blocking and randomization for experimental design

    HTML 8 1

  4. space-microbe space-microbe Public

    Python 4

  5. bescape bescape Public

    BESCApe is a cell deconvolution package.

    HTML 3 1

  6. GeMS GeMS Public

    Gene set management system based on a MongoDB backend

    Python 3 1

Repositories

Showing 10 of 49 repositories
  • splicekit Public

    splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq

    bedapub/splicekit’s past year of commit activity
    Python 15 GPL-3.0 4 3 0 Updated Jan 20, 2025
  • TCBinducedTMEreprogramming_CEATCBMC38_scRNAseq_publication- Public

    Notebooks used to produce results for the publication "Tumor Microenvironment Reprogramming Induced by T Cell Engager Treatment" related to the in vivo CEA-TCB MC38-huCEA data.

    bedapub/TCBinducedTMEreprogramming_CEATCBMC38_scRNAseq_publication-’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 16, 2025
  • AAVimmuneresponse_scRNAseq_PBMC_publication Public

    Notebooks utilized to produce results for the publication "Innate immune response to AAV-based gene therapy vectors: mechanisms of complement activation and cytokine release"

    bedapub/AAVimmuneresponse_scRNAseq_PBMC_publication’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 14, 2025
  • besca Public

    BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis

    bedapub/besca’s past year of commit activity
    Python 49 GPL-3.0 17 30 (1 issue needs help) 7 Updated Jan 8, 2025
  • bksnake Public

    Public version of bksnake - biokit snakemake - bulk RNASeq Snakemake workflow

    bedapub/bksnake’s past year of commit activity
    Python 2 0 0 0 Updated Dec 23, 2024
  • kinex Public

    Kinex infers causal kinases from phosphoproteomics data

    bedapub/kinex’s past year of commit activity
    Python 2 GPL-3.0 1 0 0 Updated Dec 8, 2024
  • ribiosUtils Public

    The ribiosUtils package, a swiss-army knife for bioinformatics and computational biology tasks in drug discovery

    bedapub/ribiosUtils’s past year of commit activity
    C 0 1 1 0 Updated Dec 5, 2024
  • designit Public

    Blocking and randomization for experimental design

    bedapub/designit’s past year of commit activity
    HTML 8 1 15 (4 issues need help) 3 Updated Nov 11, 2024
  • ribiosIO Public

    File input and output module of the ribios suite

    bedapub/ribiosIO’s past year of commit activity
    C 0 1 0 0 Updated Oct 17, 2024
  • ComplexSim Public
    bedapub/ComplexSim’s past year of commit activity
    R 1 0 0 0 Updated Sep 20, 2024
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