Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Io to bio with genbank fixes #394

Merged
merged 22 commits into from
Nov 5, 2023
Merged

Io to bio with genbank fixes #394

merged 22 commits into from
Nov 5, 2023

Commits on Oct 30, 2023

  1. Added generic collections module

    @abondrn
    abondrn committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    158fcf1 View commit details
    Browse the repository at this point in the history

  2. Switched Feature.Attributes to use multimap

    @abondrn
    abondrn committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    8862a6c View commit details
    Browse the repository at this point in the history

  3. Fixed tests

    @abondrn
    abondrn committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    ef07e94 View commit details
    Browse the repository at this point in the history

  4. Ran linter

    @abondrn
    abondrn committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    cac1e55 View commit details
    Browse the repository at this point in the history

  5. Added copy methods

    @abondrn
    abondrn committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    8025bc2 View commit details
    Browse the repository at this point in the history

  6. Adds new functional test that addresses case where there is a partial… 

    … on an implicit range, standardizes parse error format for clarity
    @abondrn
    abondrn committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    1f49f9d View commit details
    Browse the repository at this point in the history

  7. Ran linter

    @abondrn
    abondrn committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    8112866 View commit details
    Browse the repository at this point in the history

  8. Add capability to compute sequence features and marshal en masse

    @abondrn
    abondrn committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    fec8796 View commit details
    Browse the repository at this point in the history

  9. Add methods to convert polyjson -> genbank

    @abondrn
    abondrn committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    9ce9f4f View commit details
    Browse the repository at this point in the history

  10. Removed generic collections library in favor of hand-rolled multimap,… 

    … with the added benefit of better cmp interop
    @abondrn
    abondrn committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    89a2ba4 View commit details
    Browse the repository at this point in the history

  11. Propogate handrolled multimap to test files

    @abondrn
    abondrn committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    b88d7b8 View commit details
    Browse the repository at this point in the history

  12. Responded to more comments

    @abondrn
    abondrn committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    b4c3a37 View commit details
    Browse the repository at this point in the history

Commits on Oct 31, 2023

  1. Reduced new example genbank file

    @abondrn
    abondrn committed Oct 31, 2023
    Configuration menu
    Copy the full SHA
    8b82d7b View commit details
    Browse the repository at this point in the history

  2. Resolved lint errors, added test StoreFeatureSequences and fixed unco… 

    …vered bug
    @abondrn
    abondrn committed Oct 31, 2023
    Configuration menu
    Copy the full SHA
    f523651 View commit details
    Browse the repository at this point in the history

  3. Added multimap.go file doc

    @abondrn
    abondrn committed Oct 31, 2023
    Configuration menu
    Copy the full SHA
    1270ec8 View commit details
    Browse the repository at this point in the history

  4. Responded to more comments

    @abondrn
    abondrn committed Oct 31, 2023
    Configuration menu
    Copy the full SHA
    9c322f6 View commit details
    Browse the repository at this point in the history

Commits on Nov 4, 2023

  1. First merge attempt

    @abondrn
    abondrn committed Nov 4, 2023
    Configuration menu
    Copy the full SHA
    f124fae View commit details
    Browse the repository at this point in the history

  2. Fixed deref issue

    @abondrn
    abondrn committed Nov 4, 2023
    Configuration menu
    Copy the full SHA
    98b6984 View commit details
    Browse the repository at this point in the history

  3. Merged updated branch

    @abondrn
    abondrn committed Nov 4, 2023
    Configuration menu
    Copy the full SHA
    fc2ca75 View commit details
    Browse the repository at this point in the history

  4. Fixed tests, moved genbank files

    @abondrn
    abondrn committed Nov 4, 2023
    Configuration menu
    Copy the full SHA
    25e0f61 View commit details
    Browse the repository at this point in the history

  5. Fixed fasta docs

    @abondrn
    abondrn committed Nov 4, 2023
    Configuration menu
    Copy the full SHA
    60abf6d View commit details
    Browse the repository at this point in the history

Commits on Nov 5, 2023

  1. Added changelog

    @abondrn
    abondrn committed Nov 5, 2023
    Configuration menu
    Copy the full SHA
    7e3c812 View commit details
    Browse the repository at this point in the history