moved align, bwt, and mash into new search package. (#438)

* moved align, bwt, and mash into new search package. * updated import paths.
bebop · Jan 18, 2024 · b76edb9 · b76edb9
1 parent 176dd5b
commit b76edb9
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Showing 18 changed files with 9 additions and 9 deletions.
diff --git a/align/align.go → search/align/align.go b/align/align.go → search/align/align.go
@@ -66,7 +66,7 @@ Tim
 package align
 
 import (
-	"github.com/bebop/poly/align/matrix"
+	"github.com/bebop/poly/search/align/matrix"
 )
 
 // Scoring is a struct that holds the scoring matrix for match, mismatch, and gap penalties.

diff --git a/align/align_test.go → search/align/align_test.go b/align/align_test.go → search/align/align_test.go
@@ -3,9 +3,9 @@ package align_test
 import (
 	"testing"
 
-	"github.com/bebop/poly/align"
-	"github.com/bebop/poly/align/matrix"
 	"github.com/bebop/poly/alphabet"
+	"github.com/bebop/poly/search/align"
+	"github.com/bebop/poly/search/align/matrix"
 )
 
 func TestNeedlemanWunsch(t *testing.T) {

diff --git a/align/example_test.go → search/align/example_test.go b/align/example_test.go → search/align/example_test.go
@@ -4,9 +4,9 @@ package align_test
 import (
 	"fmt"
 
-	"github.com/bebop/poly/align"
-	"github.com/bebop/poly/align/matrix"
 	"github.com/bebop/poly/alphabet"
+	"github.com/bebop/poly/search/align"
+	"github.com/bebop/poly/search/align/matrix"
 )
 
 func ExampleNeedlemanWunsch() {

diff --git a/align/matrix/matrices.go → search/align/matrix/matrices.go b/align/matrix/matrices.go → search/align/matrix/matrices.go
diff --git a/align/matrix/matrix.go → search/align/matrix/matrix.go b/align/matrix/matrix.go → search/align/matrix/matrix.go
diff --git a/align/matrix/matrix_test.go → search/align/matrix/matrix_test.go b/align/matrix/matrix_test.go → search/align/matrix/matrix_test.go
@@ -3,8 +3,8 @@ package matrix_test
 import (
 	"testing"
 
-	"github.com/bebop/poly/align/matrix"
 	"github.com/bebop/poly/alphabet"
+	"github.com/bebop/poly/search/align/matrix"
 	"github.com/stretchr/testify/assert"
 )
 

diff --git a/bwt/bitvector.go → search/bwt/bitvector.go b/bwt/bitvector.go → search/bwt/bitvector.go
diff --git a/bwt/bitvector_test.go → search/bwt/bitvector_test.go b/bwt/bitvector_test.go → search/bwt/bitvector_test.go
diff --git a/bwt/bwt.go → search/bwt/bwt.go b/bwt/bwt.go → search/bwt/bwt.go
diff --git a/bwt/bwt_test.go → search/bwt/bwt_test.go b/bwt/bwt_test.go → search/bwt/bwt_test.go
diff --git a/bwt/example_test.go → search/bwt/example_test.go b/bwt/example_test.go → search/bwt/example_test.go
@@ -4,7 +4,7 @@ import (
 	"fmt"
 	"log"
 
-	"github.com/bebop/poly/bwt"
+	"github.com/bebop/poly/search/bwt"
 	"golang.org/x/exp/slices"
 )
 

diff --git a/bwt/rsa_bitvector.go → search/bwt/rsa_bitvector.go b/bwt/rsa_bitvector.go → search/bwt/rsa_bitvector.go
diff --git a/bwt/rsa_bitvector_test.go → search/bwt/rsa_bitvector_test.go b/bwt/rsa_bitvector_test.go → search/bwt/rsa_bitvector_test.go
diff --git a/bwt/wavelet.go → search/bwt/wavelet.go b/bwt/wavelet.go → search/bwt/wavelet.go
diff --git a/bwt/wavelet_test.go → search/bwt/wavelet_test.go b/bwt/wavelet_test.go → search/bwt/wavelet_test.go
diff --git a/mash/example_test.go → search/mash/example_test.go b/mash/example_test.go → search/mash/example_test.go
@@ -3,7 +3,7 @@ package mash_test
 import (
 	"fmt"
 
-	"github.com/bebop/poly/mash"
+	"github.com/bebop/poly/search/mash"
 )
 
 func ExampleMash() {

diff --git a/mash/mash.go → search/mash/mash.go b/mash/mash.go → search/mash/mash.go
diff --git a/mash/mash_test.go → search/mash/mash_test.go b/mash/mash_test.go → search/mash/mash_test.go
@@ -3,7 +3,7 @@ package mash_test
 import (
 	"testing"
 
-	"github.com/bebop/poly/mash"
+	"github.com/bebop/poly/search/mash"
 )
 
 func TestMash(t *testing.T) {