Releases: bbfrederick/rapidtide
Releases · bbfrederick/rapidtide
Version 3.0alpha2 - 12/30/24 Critical bug fix and an enhancement
- (happy, rapidtide) Now do (correct) checking to see if running in a container that now handles both Docker and Singularity/Apptainer properly. Thank you to Derek Monroe (https://github.com/dcmonroe) for the catch and the fix!
- (package) Now includes codespell checking thanks to Yaroslav O. Halchenko (https://github.com/yarikoptic)!
Version 3.0alpha1 - 12/20/24 First alpha of rapidtide 3.0
- (rapidtide) The
--fixdelayoption has been split into two options.--initialdelay DELAYlets you specify either a float that sets the starting delay for every voxel to that value, or a 3D file specifying the initial delay for each voxel.--nodelayfitdetermines whether the delay can be adjusted from its initial value. Closes #171. KNOWN ISSUE: If you supply an initial delay map, instead of using the global mean, you should use the delays to make your first stage regressor. Currently that is not the case. - (rapidtide) Reorganized command line options and adjusted the default values.
- (rapidtide) Help output now shows the filter ranges.
- (rapidtide, retroglm) Added delay refinement using the ratio of the fit coefficients of the regressor and its time derivative.
- (rapidtide, retroglm) Fixed a bad shared memory leak.
- (retroglm) Significantly enhanced logging.
- (retroglm) Added canary files.
- (rapidtide) Implemented delay map patching.
- (rapidtide) Write out individual EV timecourses.
- (Docker) Cleaned up some internal variables.
- (Docker) Improved build and testing scripts.
- (io) Added function to compare nifti files with some tolerance.
- (docs) Automated more table generation.
- (package) Merged some dependabot PRs.
- (package) Fixed a fairly big, but not necessarily impactful bug. mlregress returned R2, not R, so anything referring to the R of a fit was actually squared (R was actually R2, R2 was actually R4).
Version 2.9.9.5 - 11/15/24 Deployment fix
- (deployment) New idea - split the README.rst file to remove potentially offending reference stuff.
Version 2.9.9.4 - 11/15/24 Deployment fix attempt
- (deployment) Attempt to fix deployment by essentially giving up.
Version 2.9.9.3 - 11/15/24 deployment bump
- (deployment) Yet another attempt to fix deployment.
Version 2.9.9.2 - 11/14/24 container and deployment fix
- (rapidtide) Fixed https://neurostars.org/t/indexing-error-during-regressor-refinment/30790
- (rapidtide) Addressed #175
- (rapidtide) Added the ability to mask data before spatial filtering.
- (rapidtide) Revised shared memory access to use more modern interface.
- (rapidtide) Clarified option descriptions in help output.
- (Docker) Temporary workaround for #180
- (deployment) Tried to fix pypi deployment.
- (showtc) Fixed legends when using multiple input files.
- (docs) More reference reformatting.
Version 2.9.9.1 - 10/28/24 Documentation upgrade and bug fix
- (rapidtide) Properly set the "_nodefault" flag on "passes". Should resolve #178.
- (rapidtide) Terminate despeckling if the number of voxels to despeckle is not changing.
- (rapidtide,ccorrica) Changed default correlation weighting to "phat".
- (ccorrica) Output filtered timecourses.
- (docs) More documentation enhancements by tsalo.
- (docs) Updated requirements.txt file to reflect recent documentation changes so readthedocs build would complete.
- (docs) Converted all references to bibtex.
- (package) Merged some dependabot PRs.
Version 2.9.9 - 10/22/24 October checkpoint
- (docs) Integrated lots of documentation upgrades from Taylor Salo (tsalo).
- (rapidtide) Changed correlation mask to use brain mask as correlation mask if provided.
- (rapidtide) Lowered the default lagminthresh, lagmaxthresh.
- (rapidtide,happy) Improved creation and deletion of canary files.
- (dlfilter) Simplified to support only newer versions of tensorflow 2.X and fix some deprecation problems.
- (atlastool) Fixed 4D processing.
- (showtc) Allowed display of timecourses with different x axes on the same timeline.
- (package) Defined a new filter band - "lfo_tight" from 0.01-0.1Hz (matches a lot of papers).
- (package) Enhanced filter testing.
- (package) Updated requirements to fix tensorflow installation.
- (package) Merged some dependabot PRs.
Version 2.9.8.2 - 9/24/24 Grrrrr
- (package) Pypi doesn't like it when you redeploy with the same tag number...
Version 2.9.8.1 - 9/24/24 Changed arguments to retrolagtcs
- (retrolagtcs) Now only use one mask (corrmask).
- (retrolagtcs) Now only load the fmri file header to save memory.