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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(ESS,factor)
S3method(ESS,numeric)
S3method(ESS,phybreak)
S3method(c,phybreak)
S3method(logLik,phybreak)
S3method(plot,phybreak)
S3method(plot,phybreakdata)
S3method(print,phybreak)
S3method(quantile,phybreak)
S3method(thin,phybreak)
export(ESS)
export(burnin.phybreak)
export(burnin_phybreak)
export(get.mcmc)
export(get.multiPhylo)
export(get.parameters)
export(get.phylo)
export(get.seqdata)
export(get.tree)
export(get_bottlenecks)
export(get_data)
export(get_mcmc)
export(get_multiPhylo)
export(get_parameters)
export(get_phylo)
export(get_transtree)
export(infect_distribution)
export(infectorsets)
export(phybreak)
export(phybreakdata)
export(phylotree)
export(plotPhylo)
export(plotPhyloTrans)
export(plotTrans)
export(sample.phybreak)
export(sample_phybreak)
export(sample_phybreak_parallel)
export(sim.phybreak)
export(sim_phybreak)
export(transtree)
import(ape)
import(phangorn)
importFrom(Rcpp,sourceCpp)
importFrom(coda,effectiveSize)
importFrom(coda,thin)
importFrom(grDevices,devAskNewPage)
importFrom(graphics,arrows)
importFrom(graphics,axTicks)
importFrom(graphics,axis)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,plot.window)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(methods,new)
importFrom(sp,spDists)
importFrom(stats,dgamma)
importFrom(stats,median)
importFrom(stats,pgamma)
importFrom(stats,quantile)
importFrom(stats,rgamma)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(stringr,str_pad)
importFrom(utils,head)
importFrom(utils,tail)
useDynLib(phybreak)