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1. vargraph vargraph Public

   Making variation graphs and finding virus strains in the graphs

   Python

2. MutationalPatterns MutationalPatterns Public

   Forked from UMCUGenetics/MutationalPatterns

   R package for extracting and visualizing mutational patterns in base substitution catalogues

   R

3. DriverProbabilities DriverProbabilities Public

   Risk analysis of mutating driver genes

   R

4. IDT_SingleUMI_Pipeline IDT_SingleUMI_Pipeline Public

   Pipeline for mapping of Fastq files with single UMI and first n nucleotides of the read

   Shell 1

5. phybreak phybreak Public

   Forked from donkeyshot/phybreak

   Outbreak reconstruction with sequence data

   R 1

6. phybreak_multiple_introductions phybreak_multiple_introductions Public

   Phybreak version and additional code used for the analyses in article of multiple introductions

   R