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| ### Changelog | ||
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| All notable changes to this project will be documented in this file. Dates are displayed in UTC. | ||
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| Generated by [`auto-changelog`](https://github.com/CookPete/auto-changelog). | ||
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| #### [v0.2.4](https://github.com/barahona-research-group/PyGenStability/compare/v1.9...v0.2.4) | ||
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| - Feat: data clustering workflow [`#94`](https://github.com/barahona-research-group/PyGenStability/pull/94) | ||
| - Update README.md [`#93`](https://github.com/barahona-research-group/PyGenStability/pull/93) | ||
| - Feat: Update installation in readme [`#92`](https://github.com/barahona-research-group/PyGenStability/pull/92) | ||
| - Fix: Remove weird characters and fix no louvain [`#91`](https://github.com/barahona-research-group/PyGenStability/pull/91) | ||
| - Feat: Make some deps optional [`#90`](https://github.com/barahona-research-group/PyGenStability/pull/90) | ||
| - Fix: Make dtypes consistent at float64 [`#89`](https://github.com/barahona-research-group/PyGenStability/pull/89) | ||
| - Small improvements [`#85`](https://github.com/barahona-research-group/PyGenStability/pull/85) | ||
| - Update README.md [`#84`](https://github.com/barahona-research-group/PyGenStability/pull/84) | ||
| - Add matrix plot [`#83`](https://github.com/barahona-research-group/PyGenStability/pull/83) | ||
| - Try to fix instabilities [`#82`](https://github.com/barahona-research-group/PyGenStability/pull/82) | ||
| - Add ref to arxiv paper [`#80`](https://github.com/barahona-research-group/PyGenStability/pull/80) | ||
| - Add readme in long_description [`#79`](https://github.com/barahona-research-group/PyGenStability/pull/79) | ||
| - Fixed indices in formula [`#78`](https://github.com/barahona-research-group/PyGenStability/pull/78) | ||
| - fixed doc for linearized constructor [`#77`](https://github.com/barahona-research-group/PyGenStability/pull/77) | ||
| - Signed combinatorial constructor [`#75`](https://github.com/barahona-research-group/PyGenStability/pull/75) | ||
| - Update benchmark and better numpy multi-threading handling [`#76`](https://github.com/barahona-research-group/PyGenStability/pull/76) | ||
| - Update cli [`#74`](https://github.com/barahona-research-group/PyGenStability/pull/74) | ||
| - Improve doc [`#73`](https://github.com/barahona-research-group/PyGenStability/pull/73) | ||
| - Improve doc [`#72`](https://github.com/barahona-research-group/PyGenStability/pull/72) | ||
| - Improve doc [`#71`](https://github.com/barahona-research-group/PyGenStability/pull/71) | ||
| - Implementation of linearized_directed constructor [`#70`](https://github.com/barahona-research-group/PyGenStability/pull/70) | ||
| - Compute matrix exponential via spectral decomposition [`#68`](https://github.com/barahona-research-group/PyGenStability/pull/68) | ||
| - Improve documentation [`#67`](https://github.com/barahona-research-group/PyGenStability/pull/67) | ||
| - Improve examples [`#65`](https://github.com/barahona-research-group/PyGenStability/pull/65) | ||
| - Fix CI [`#64`](https://github.com/barahona-research-group/PyGenStability/pull/64) | ||
| - Add more examples [`#60`](https://github.com/barahona-research-group/PyGenStability/pull/60) | ||
| - New scale selection algorithm [`#63`](https://github.com/barahona-research-group/PyGenStability/pull/63) | ||
| - Add leiden solver [`#43`](https://github.com/barahona-research-group/PyGenStability/pull/43) | ||
| - Add example notebooks to doc [`#61`](https://github.com/barahona-research-group/PyGenStability/pull/61) | ||
| - Increase coverage to 100 [`#59`](https://github.com/barahona-research-group/PyGenStability/pull/59) | ||
| - Improve doc [`#58`](https://github.com/barahona-research-group/PyGenStability/pull/58) | ||
| - Update documentation [`#57`](https://github.com/barahona-research-group/PyGenStability/pull/57) | ||
| - Improve scale selection [`#52`](https://github.com/barahona-research-group/PyGenStability/pull/52) | ||
| - Improve example [`#55`](https://github.com/barahona-research-group/PyGenStability/pull/55) | ||
| - Add benchmarking capability [`#54`](https://github.com/barahona-research-group/PyGenStability/pull/54) | ||
| - Improve coverage [`#53`](https://github.com/barahona-research-group/PyGenStability/pull/53) | ||
| - Preloop for constructors [`#51`](https://github.com/barahona-research-group/PyGenStability/pull/51) | ||
| - changed order of postprocessing and ttprime [`#49`](https://github.com/barahona-research-group/PyGenStability/pull/49) | ||
| - fix example duplicate code [`#47`](https://github.com/barahona-research-group/PyGenStability/pull/47) | ||
| - multiscale example [`#45`](https://github.com/barahona-research-group/PyGenStability/pull/45) | ||
| - add codecov [`#44`](https://github.com/barahona-research-group/PyGenStability/pull/44) | ||
| - improve ttprime [`#42`](https://github.com/barahona-research-group/PyGenStability/pull/42) | ||
| - fix ci [`#39`](https://github.com/barahona-research-group/PyGenStability/pull/39) | ||
| - add tests [`#38`](https://github.com/barahona-research-group/PyGenStability/pull/38) | ||
| - Example notebooks + some cleaning [`#34`](https://github.com/barahona-research-group/PyGenStability/pull/34) | ||
| - select scales function and plotting [`#25`](https://github.com/barahona-research-group/PyGenStability/pull/25) | ||
| - Update notebooks and rename time to scale (#56) [`403e461`](https://github.com/barahona-research-group/PyGenStability/commit/403e461fb95ff6cdb8e5577236df4a9ecb8ac190) | ||
| - fix [`fb77583`](https://github.com/barahona-research-group/PyGenStability/commit/fb775836eefe40cff6f478723cfa4c37ef2d2dd8) | ||
| - clean example folder [`7f7fe47`](https://github.com/barahona-research-group/PyGenStability/commit/7f7fe47e5a04ebc0e26263a3c35df8e20f144c7c) | ||
|
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| #### [v1.9](https://github.com/barahona-research-group/PyGenStability/compare/v1.8...v1.9) | ||
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| > 15 February 2021 | ||
| - bump version [`e41e2ed`](https://github.com/barahona-research-group/PyGenStability/commit/e41e2ed157d691b3db8e0a7db7166836f36f75d9) | ||
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| #### [v1.8](https://github.com/barahona-research-group/PyGenStability/compare/v1.7...v1.8) | ||
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| > 15 February 2021 | ||
| - small corrections [`#32`](https://github.com/barahona-research-group/PyGenStability/pull/32) | ||
| - docstring update [`cebf105`](https://github.com/barahona-research-group/PyGenStability/commit/cebf105ce79ed6b753128ac3de8b24b39463ed9d) | ||
| - example cleanup [`5cc3c76`](https://github.com/barahona-research-group/PyGenStability/commit/5cc3c76e8de8fa768f3696a8bc182aa70c2664d2) | ||
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| #### [v1.7](https://github.com/barahona-research-group/PyGenStability/compare/v1.6.5...v1.7) | ||
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| > 11 February 2021 | ||
| #### [v1.6.5](https://github.com/barahona-research-group/PyGenStability/compare/v1.6.4...v1.6.5) | ||
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| > 11 February 2021 | ||
| - Update python-publish.yml [`91032a0`](https://github.com/barahona-research-group/PyGenStability/commit/91032a04047031f6acb5c12734b429407e48feeb) | ||
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| #### [v1.6.4](https://github.com/barahona-research-group/PyGenStability/compare/v1.6.3...v1.6.4) | ||
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| > 11 February 2021 | ||
| - Update python-publish.yml [`8966563`](https://github.com/barahona-research-group/PyGenStability/commit/8966563cc2403881f7ff082b6ae38f6180668e82) | ||
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| #### [v1.6.3](https://github.com/barahona-research-group/PyGenStability/compare/v1.6.2...v1.6.3) | ||
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| > 11 February 2021 | ||
| - Update python-publish.yml [`87e1d57`](https://github.com/barahona-research-group/PyGenStability/commit/87e1d578da36cb12db69647240b869ff0d1439ba) | ||
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| #### [v1.6.2](https://github.com/barahona-research-group/PyGenStability/compare/v1.6.1...v1.6.2) | ||
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| > 11 February 2021 | ||
| - Update python-publish.yml [`3d51ef2`](https://github.com/barahona-research-group/PyGenStability/commit/3d51ef2fa566d48ffdf98a207856f5231b4266b6) | ||
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| #### [v1.6.1](https://github.com/barahona-research-group/PyGenStability/compare/v1.6...v1.6.1) | ||
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| > 11 February 2021 | ||
| - update pypi [`0e51ac5`](https://github.com/barahona-research-group/PyGenStability/commit/0e51ac59efcbe0c007f0aafa037fd79173cdb46c) | ||
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| #### [v1.6](https://github.com/barahona-research-group/PyGenStability/compare/v1.5...v1.6) | ||
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| > 11 February 2021 | ||
| - use class in constructors [`#29`](https://github.com/barahona-research-group/PyGenStability/pull/29) | ||
| - fixed quality indices [`#24`](https://github.com/barahona-research-group/PyGenStability/pull/24) | ||
| - added licence [`294c76f`](https://github.com/barahona-research-group/PyGenStability/commit/294c76f7a4b438d13b5ab9cb9b0df474ebe4d10c) | ||
| - constructor [`50305e7`](https://github.com/barahona-research-group/PyGenStability/commit/50305e78836a84aea9d6f9fec08114e52539bed3) | ||
| - initial doc commit [`78dafd0`](https://github.com/barahona-research-group/PyGenStability/commit/78dafd0c73d324431d0a7a9a216d19b096659cae) | ||
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| #### [v1.5](https://github.com/barahona-research-group/PyGenStability/compare/v1.4...v1.5) | ||
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| > 30 January 2021 | ||
| - Update python-publish.yml [`dc5446a`](https://github.com/barahona-research-group/PyGenStability/commit/dc5446a63da5c15bf125f549a7ebaee09b8216fe) | ||
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| #### [v1.4](https://github.com/barahona-research-group/PyGenStability/compare/v1.3...v1.4) | ||
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| > 30 January 2021 | ||
| - Update python-publish.yml [`3601d4f`](https://github.com/barahona-research-group/PyGenStability/commit/3601d4f0fe713550e9be2622ca1289c013ba6934) | ||
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| #### [v1.3](https://github.com/barahona-research-group/PyGenStability/compare/v1.2...v1.3) | ||
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| > 30 January 2021 | ||
| - Update python-publish.yml [`2d00ddb`](https://github.com/barahona-research-group/PyGenStability/commit/2d00ddb46f458714724bbc03a888a06feee7ec3b) | ||
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| #### [v1.2](https://github.com/barahona-research-group/PyGenStability/compare/v1.1...v1.2) | ||
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| > 30 January 2021 | ||
| - Update python-publish.yml [`c6aa885`](https://github.com/barahona-research-group/PyGenStability/commit/c6aa88530f5859aa299046ad9947a3677bdf92ed) | ||
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| ### [v1.1](https://github.com/barahona-research-group/PyGenStability/compare/v0.2.4...v1.1) | ||
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| > 30 January 2021 | ||
| #### [v0.2.4](https://github.com/barahona-research-group/PyGenStability/compare/v0.2.3...v0.2.4) | ||
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| > 5 May 2023 | ||
| - Fix setup.py [`0b158bc`](https://github.com/barahona-research-group/PyGenStability/commit/0b158bcd026472edc488addddab002b1276fd278) | ||
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| #### [v0.2.3](https://github.com/barahona-research-group/PyGenStability/compare/v0.2.2...v0.2.3) | ||
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| > 28 April 2023 | ||
| - Try to fix instabilities [`#82`](https://github.com/barahona-research-group/PyGenStability/pull/82) | ||
| - Add ref to arxiv paper [`#80`](https://github.com/barahona-research-group/PyGenStability/pull/80) | ||
| - bump version [`4ee1f3f`](https://github.com/barahona-research-group/PyGenStability/commit/4ee1f3f60f7583e127038fbab0e2cf8f2fa29d8b) | ||
| - fix pypi [`66a573e`](https://github.com/barahona-research-group/PyGenStability/commit/66a573eb07e67633127bfd77f37fe9bff2904a7a) | ||
|
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| #### [v0.2.2](https://github.com/barahona-research-group/PyGenStability/compare/v0.2.1...v0.2.2) | ||
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| > 8 March 2023 | ||
| - Add readme in long_description [`#79`](https://github.com/barahona-research-group/PyGenStability/pull/79) | ||
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| #### [v0.2.1](https://github.com/barahona-research-group/PyGenStability/compare/v0.2.0...v0.2.1) | ||
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| > 8 March 2023 | ||
| - fix release [`8ab25cd`](https://github.com/barahona-research-group/PyGenStability/commit/8ab25cd2452cf065e635bfa6f08108deced9f66b) | ||
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| #### [v0.2.0](https://github.com/barahona-research-group/PyGenStability/compare/v0.1.6...v0.2.0) | ||
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| > 8 March 2023 | ||
| - Fixed indices in formula [`#78`](https://github.com/barahona-research-group/PyGenStability/pull/78) | ||
| - fixed doc for linearized constructor [`#77`](https://github.com/barahona-research-group/PyGenStability/pull/77) | ||
| - Signed combinatorial constructor [`#75`](https://github.com/barahona-research-group/PyGenStability/pull/75) | ||
| - Update benchmark and better numpy multi-threading handling [`#76`](https://github.com/barahona-research-group/PyGenStability/pull/76) | ||
| - Update cli [`#74`](https://github.com/barahona-research-group/PyGenStability/pull/74) | ||
| - Improve doc [`#73`](https://github.com/barahona-research-group/PyGenStability/pull/73) | ||
| - Improve doc [`#72`](https://github.com/barahona-research-group/PyGenStability/pull/72) | ||
| - Improve doc [`#71`](https://github.com/barahona-research-group/PyGenStability/pull/71) | ||
| - Implementation of linearized_directed constructor [`#70`](https://github.com/barahona-research-group/PyGenStability/pull/70) | ||
| - Compute matrix exponential via spectral decomposition [`#68`](https://github.com/barahona-research-group/PyGenStability/pull/68) | ||
| - Improve documentation [`#67`](https://github.com/barahona-research-group/PyGenStability/pull/67) | ||
| - Improve examples [`#65`](https://github.com/barahona-research-group/PyGenStability/pull/65) | ||
| - Fix CI [`#64`](https://github.com/barahona-research-group/PyGenStability/pull/64) | ||
| - Add more examples [`#60`](https://github.com/barahona-research-group/PyGenStability/pull/60) | ||
| - New scale selection algorithm [`#63`](https://github.com/barahona-research-group/PyGenStability/pull/63) | ||
| - Add leiden solver [`#43`](https://github.com/barahona-research-group/PyGenStability/pull/43) | ||
| - Add example notebooks to doc [`#61`](https://github.com/barahona-research-group/PyGenStability/pull/61) | ||
| - fix [`fb77583`](https://github.com/barahona-research-group/PyGenStability/commit/fb775836eefe40cff6f478723cfa4c37ef2d2dd8) | ||
| - improved hypergraph example [`cd182d4`](https://github.com/barahona-research-group/PyGenStability/commit/cd182d49568508a3e3e5db940c8f84920a1726f1) | ||
| - fix [`1320e1e`](https://github.com/barahona-research-group/PyGenStability/commit/1320e1e3c41c06368974966674fc885048ff257d) | ||
|
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| #### [v0.1.6](https://github.com/barahona-research-group/PyGenStability/compare/v0.1.5...v0.1.6) | ||
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| > 21 October 2022 | ||
| - fix wheel building [`aeea2a6`](https://github.com/barahona-research-group/PyGenStability/commit/aeea2a614563861b72086410ff2c98795cff786c) | ||
|
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| #### [v0.1.5](https://github.com/barahona-research-group/PyGenStability/compare/v0.1.4...v0.1.5) | ||
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| > 21 October 2022 | ||
| #### [v0.1.4](https://github.com/barahona-research-group/PyGenStability/compare/v0.1.3...v0.1.4) | ||
|
|
||
| > 21 October 2022 | ||
| - fix wheel building [`eaa8954`](https://github.com/barahona-research-group/PyGenStability/commit/eaa895462133e60a067e194f2399e40555e84e3a) | ||
|
|
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| #### [v0.1.3](https://github.com/barahona-research-group/PyGenStability/compare/v0.1.2...v0.1.3) | ||
|
|
||
| > 21 October 2022 | ||
| - fix wheel building [`160362e`](https://github.com/barahona-research-group/PyGenStability/commit/160362e673c9f97b5a71a2d66b4367f4856396d1) | ||
|
|
||
| #### [v0.1.2](https://github.com/barahona-research-group/PyGenStability/compare/v0.1.1...v0.1.2) | ||
|
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| > 21 October 2022 | ||
| - fix wheel building [`5c65388`](https://github.com/barahona-research-group/PyGenStability/commit/5c6538823612f51c082c2c02eac16cdb19fc0256) | ||
|
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| #### [v0.1.1](https://github.com/barahona-research-group/PyGenStability/compare/v0.1.0...v0.1.1) | ||
|
|
||
| > 21 October 2022 | ||
| - fix wheel building [`6ced7a5`](https://github.com/barahona-research-group/PyGenStability/commit/6ced7a5abace3de614c91afc3cff8f230be2b92d) | ||
| - Added DOI to readme [`ce640a3`](https://github.com/barahona-research-group/PyGenStability/commit/ce640a3f68099dffb57f762df4265fc08b519236) | ||
|
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| #### v0.1.0 | ||
|
|
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| > 13 October 2022 | ||
| - Increase coverage to 100 [`#59`](https://github.com/barahona-research-group/PyGenStability/pull/59) | ||
| - Improve doc [`#58`](https://github.com/barahona-research-group/PyGenStability/pull/58) | ||
| - Update documentation [`#57`](https://github.com/barahona-research-group/PyGenStability/pull/57) | ||
| - Improve scale selection [`#52`](https://github.com/barahona-research-group/PyGenStability/pull/52) | ||
| - Improve example [`#55`](https://github.com/barahona-research-group/PyGenStability/pull/55) | ||
| - Add benchmarking capability [`#54`](https://github.com/barahona-research-group/PyGenStability/pull/54) | ||
| - Improve coverage [`#53`](https://github.com/barahona-research-group/PyGenStability/pull/53) | ||
| - Preloop for constructors [`#51`](https://github.com/barahona-research-group/PyGenStability/pull/51) | ||
| - changed order of postprocessing and ttprime [`#49`](https://github.com/barahona-research-group/PyGenStability/pull/49) | ||
| - fix example duplicate code [`#47`](https://github.com/barahona-research-group/PyGenStability/pull/47) | ||
| - multiscale example [`#45`](https://github.com/barahona-research-group/PyGenStability/pull/45) | ||
| - add codecov [`#44`](https://github.com/barahona-research-group/PyGenStability/pull/44) | ||
| - improve ttprime [`#42`](https://github.com/barahona-research-group/PyGenStability/pull/42) | ||
| - fix ci [`#39`](https://github.com/barahona-research-group/PyGenStability/pull/39) | ||
| - add tests [`#38`](https://github.com/barahona-research-group/PyGenStability/pull/38) | ||
| - Example notebooks + some cleaning [`#34`](https://github.com/barahona-research-group/PyGenStability/pull/34) | ||
| - select scales function and plotting [`#25`](https://github.com/barahona-research-group/PyGenStability/pull/25) | ||
| - small corrections [`#32`](https://github.com/barahona-research-group/PyGenStability/pull/32) | ||
| - use class in constructors [`#29`](https://github.com/barahona-research-group/PyGenStability/pull/29) | ||
| - fixed quality indices [`#24`](https://github.com/barahona-research-group/PyGenStability/pull/24) | ||
| - added directed constructor + MI -> VI [`#21`](https://github.com/barahona-research-group/PyGenStability/pull/21) | ||
| - bybind11 cleanup [`#13`](https://github.com/barahona-research-group/PyGenStability/pull/13) | ||
| - dropped params [`#12`](https://github.com/barahona-research-group/PyGenStability/pull/12) | ||
| - Update notebooks and rename time to scale (#56) [`403e461`](https://github.com/barahona-research-group/PyGenStability/commit/403e461fb95ff6cdb8e5577236df4a9ecb8ac190) | ||
| - clean example folder [`7f7fe47`](https://github.com/barahona-research-group/PyGenStability/commit/7f7fe47e5a04ebc0e26263a3c35df8e20f144c7c) | ||
| - example notebook with directed graphs [`5334454`](https://github.com/barahona-research-group/PyGenStability/commit/53344543d3daf6811cfe14fad6d3be7b77bfbcad) |
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