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Liverpool School of Tropical Medicine
- Liverpool, UK
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hello-world
hello-world Publictraining exercise from https://guides.github.com/activities/hello-world/
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heterogygous_sites_from_siblings
heterogygous_sites_from_siblings PublicThis takes the genotypes of a set of siblings in zarr format and produces a vcf file indicating SNPs that are heterozygous in all of them
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find_consensus_difference
find_consensus_difference PublicCounts the number of sites differing in the consensus sequences (opposite homozygoutes) between sets of Anopheles gambiae.
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traning_sets_IR
traning_sets_IR Publictraining sets of Cis regulatory modules operating in tissues important for insecticide resistance, to be used with SCRMshawHD
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sweeps_ASE
sweeps_ASE Publicchecks a list of Anopheles gambiae genes to see if they are in regions where selective sweeps are oberserved
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