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Merge upstream changes. #1

Merged
merged 44 commits into from
May 5, 2020
Merged

Merge upstream changes. #1

merged 44 commits into from
May 5, 2020

Commits on Feb 24, 2020

  1. Actually test error throwing for lsvqr

    @kshyatt
    kshyatt committed Feb 24, 2020
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Commits on Apr 2, 2020

  1. Implement nnz, nonzeros and nonzeroinds 

    This also fixes `show` for sparse GPU vectors.
    @janEbert
    janEbert committed Apr 2, 2020
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  2. Test nnz, nonzeros and nonzeroinds

    @janEbert
    janEbert committed Apr 2, 2020
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  3. Implement getindex 

    This also fixes `show` for sparse GPU matrices.
    @janEbert
    janEbert committed Apr 2, 2020
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Commits on Apr 6, 2020

  1. Update dependencies. 

    Project CuArrays v2.0.1
    Status `~/work/CuArrays.jl/CuArrays.jl/Project.toml`
  [621f4979]   AbstractFFTs v0.5.0
  [79e6a3ab]   Adapt v1.0.1
  [fa961155]   CEnum v0.2.0
  [3895d2a7]   CUDAapi v4.0.0
  [c5f51814]   CUDAdrv v6.2.2
  [be33ccc6]   CUDAnative v3.0.2
  [864edb3b] ↑ DataStructures v0.17.10 ⇒ v0.17.11
  [0c68f7d7]   GPUArrays v3.1.0 #cb79e08 (https://github.com/JuliaGPU/GPUArrays.jl.git)
  [1914dd2f]   MacroTools v0.5.5
  [872c559c]   NNlib v0.6.6
  [189a3867]   Reexport v0.2.0
  [ae029012]   Requires v1.0.1
  [a759f4b9]   TimerOutputs v0.5.3
  [8f399da3]   Libdl
  [37e2e46d]   LinearAlgebra
  [44cfe95a]   Pkg
  [de0858da]   Printf
  [9a3f8284]   Random
  [2f01184e]   SparseArrays
  [10745b16]   Statistics
    @github-actions
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  2. Allow scalar indexing where necessary and add a few tests

    @kshyatt
    kshyatt committed Apr 6, 2020
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  3. Merge pull request #674 from JuliaGPU/update_manifest 

    Update manifest
    @maleadt
    maleadt authored Apr 6, 2020
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Commits on Apr 7, 2020

  1. Fix scalar indexing

    @kshyatt
    kshyatt committed Apr 7, 2020
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Commits on Apr 8, 2020

  1. use the allowscalar macro

    @kshyatt
    kshyatt committed Apr 8, 2020
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  2. Merge #675 

    675: Allow scalar indexing where necessary and add a few tests r=maleadt a=kshyatt



Co-authored-by: Katharine Hyatt <khyatt@flatironinstitute.org>
    @bors @kshyatt
    bors[bot] and kshyatt authored Apr 8, 2020
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Commits on Apr 13, 2020

  1. Update dependencies. 

    Project CuArrays v2.0.1
    Status `~/work/CuArrays.jl/CuArrays.jl/Project.toml`
  [621f4979]   AbstractFFTs v0.5.0
  [79e6a3ab]   Adapt v1.0.1
  [fa961155]   CEnum v0.2.0
  [3895d2a7]   CUDAapi v4.0.0
  [c5f51814]   CUDAdrv v6.2.2
  [be33ccc6] ↑ CUDAnative v3.0.2 ⇒ v3.0.4
  [864edb3b] ↑ DataStructures v0.17.11 ⇒ v0.17.12
  [0c68f7d7]   GPUArrays v3.1.0 #cb79e08 (https://github.com/JuliaGPU/GPUArrays.jl.git)
  [1914dd2f]   MacroTools v0.5.5
  [872c559c]   NNlib v0.6.6
  [189a3867]   Reexport v0.2.0
  [ae029012]   Requires v1.0.1
  [a759f4b9]   TimerOutputs v0.5.3
  [8f399da3]   Libdl
  [37e2e46d]   LinearAlgebra
  [44cfe95a]   Pkg
  [de0858da]   Printf
  [9a3f8284]   Random
  [2f01184e]   SparseArrays
  [10745b16]   Statistics
    @github-actions
    github-actions[bot] authored Apr 13, 2020
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  2. Merge pull request #681 from JuliaGPU/update_manifest 

    Update manifest
    @maleadt
    maleadt authored Apr 13, 2020
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  3. Merge #604 

    604: Actually test error throwing for lsvqr r=maleadt a=kshyatt

Can't test mismatched dimensions if the GPU doesn't know about them

Co-authored-by: Katharine Hyatt <khyatt@flatironinstitute.org>
    @bors @kshyatt
    bors[bot] and kshyatt authored Apr 13, 2020
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  4. Wrapper functions for NNlib (#615)

    @matsueushi
    matsueushi authored Apr 13, 2020
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Commits on Apr 20, 2020

  1. Update dependencies. 

    Project CuArrays v2.0.1
    Status `~/work/CuArrays.jl/CuArrays.jl/Project.toml`
  [621f4979]   AbstractFFTs v0.5.0
  [79e6a3ab]   Adapt v1.0.1
  [fa961155]   CEnum v0.2.0
  [3895d2a7]   CUDAapi v4.0.0
  [c5f51814]   CUDAdrv v6.2.2
  [be33ccc6]   CUDAnative v3.0.4
  [864edb3b] ↑ DataStructures v0.17.12 ⇒ v0.17.13
  [0c68f7d7]   GPUArrays v3.1.0 #cb79e08 (https://github.com/JuliaGPU/GPUArrays.jl.git)
  [1914dd2f]   MacroTools v0.5.5
  [872c559c]   NNlib v0.6.6
  [189a3867]   Reexport v0.2.0
  [ae029012]   Requires v1.0.1
  [a759f4b9] ↑ TimerOutputs v0.5.3 ⇒ v0.5.4
  [8f399da3]   Libdl
  [37e2e46d]   LinearAlgebra
  [44cfe95a]   Pkg
  [de0858da]   Printf
  [9a3f8284]   Random
  [2f01184e]   SparseArrays
  [10745b16]   Statistics
    @github-actions
    github-actions[bot] authored Apr 20, 2020
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  2. Merge pull request #686 from JuliaGPU/update_manifest 

    Update manifest
    @maleadt
    maleadt authored Apr 20, 2020
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  3. Bump version

    @maleadt
    maleadt authored Apr 20, 2020
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Commits on Apr 22, 2020

  1. fix 1d convolution

    @AStupidBear
    AStupidBear committed Apr 22, 2020
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Commits on Apr 23, 2020

  1. Test getindex

    @janEbert
    janEbert committed Apr 23, 2020
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  2. add comment to fix1d

    @AStupidBear
    AStupidBear committed Apr 23, 2020
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Commits on Apr 24, 2020

  1. Disable the GC after taking pool-related spinlocks.

    @maleadt
    maleadt committed Apr 24, 2020
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  2. Merge pull request #690 from AStupidBear/conv1d 

    fix 1d convolution
    @maleadt
    maleadt authored Apr 24, 2020
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  3. Merge pull request #572 from janEbert/sparse 

    Implement a few sparse array basics
    @maleadt
    maleadt authored Apr 24, 2020
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  4. Use released GPUArrays.

    @maleadt
    maleadt committed Apr 24, 2020
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Commits on Apr 25, 2020

  1. Only disable finalizers, not the entire GC.

    @maleadt
    maleadt committed Apr 25, 2020
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Commits on Apr 26, 2020

  1. Enable finalizers only after releasing the lock.

    @maleadt
    maleadt committed Apr 26, 2020
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  2. Update src/memory.jl 

    Co-Authored-By: Valentin Churavy <vchuravy@users.noreply.github.com>
    @maleadt @vchuravy
    maleadt and vchuravy authored Apr 26, 2020
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  3. Fix sparse mul!

    @amontoison
    amontoison committed Apr 26, 2020
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  4. Improve mul! testset names

    @amontoison
    amontoison committed Apr 26, 2020
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  5. Fix A' * x products for complex CuSparseMatrixCSC

    @amontoison
    amontoison committed Apr 26, 2020
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Commits on Apr 27, 2020

  1. Update dependencies. 

    Project CuArrays v2.1.0
    Status `~/work/CuArrays.jl/CuArrays.jl/Project.toml`
  [621f4979]   AbstractFFTs v0.5.0
  [79e6a3ab]   Adapt v1.0.1
  [fa961155]   CEnum v0.2.0
  [3895d2a7]   CUDAapi v4.0.0
  [c5f51814] ↑ CUDAdrv v6.2.2 ⇒ v6.2.3
  [be33ccc6]   CUDAnative v3.0.4
  [864edb3b]   DataStructures v0.17.13
  [0c68f7d7]   GPUArrays v3.2.0
  [1914dd2f]   MacroTools v0.5.5
  [872c559c]   NNlib v0.6.6
  [189a3867]   Reexport v0.2.0
  [ae029012]   Requires v1.0.1
  [a759f4b9] ↑ TimerOutputs v0.5.4 ⇒ v0.5.5
  [8f399da3]   Libdl
  [37e2e46d]   LinearAlgebra
  [44cfe95a]   Pkg
  [de0858da]   Printf
  [9a3f8284]   Random
  [2f01184e]   SparseArrays
  [10745b16]   Statistics
    @github-actions
    github-actions[bot] authored Apr 27, 2020
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  2. Merge pull request #694 from JuliaGPU/update_manifest 

    Update manifest
    @maleadt
    maleadt authored Apr 27, 2020
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  3. Merge #692 

    692: Fix sparse mul! r=amontoison a=amontoison

close #629 
#630 , #637 
@haampie 

Co-authored-by: Alexis Montoison <alexis.montoison@polymtl.ca>
    @bors @amontoison
    bors[bot] and amontoison authored Apr 27, 2020
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  4. adds wrappers for syevjBatched/heevjBatched family of CUSOLVER functions

    @electronsandstuff
    electronsandstuff committed Apr 27, 2020
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Commits on Apr 28, 2020

  1. Merge pull request #693 from JuliaGPU/tb/disable_gc 

    Disable the GC after taking pool-related spinlocks.
    @maleadt
    maleadt authored Apr 28, 2020
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Commits on Apr 30, 2020

  1. Merge pull request #695 from electronsandstuff/electronsandstuff/syev… 

    …jBatched

adds wrappers for syevjBatched/heevjBatched family of CUSOLVER functions
    @maleadt
    maleadt authored Apr 30, 2020
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Commits on May 1, 2020

  1. Don't require capability 7.5 for testing.

    @maleadt
    maleadt committed May 1, 2020
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Commits on May 4, 2020

  1. Update dependencies. 

    Project CuArrays v2.1.0
    Status `~/work/CuArrays.jl/CuArrays.jl/Project.toml`
  [621f4979]   AbstractFFTs v0.5.0
  [79e6a3ab]   Adapt v1.0.1
  [fa961155]   CEnum v0.2.0
  [3895d2a7]   CUDAapi v4.0.0
  [c5f51814]   CUDAdrv v6.2.3
  [be33ccc6]   CUDAnative v3.0.4
  [864edb3b] ↑ DataStructures v0.17.13 ⇒ v0.17.15
  [0c68f7d7]   GPUArrays v3.2.0
  [1914dd2f]   MacroTools v0.5.5
  [872c559c]   NNlib v0.6.6
  [189a3867]   Reexport v0.2.0
  [ae029012]   Requires v1.0.1
  [a759f4b9]   TimerOutputs v0.5.5
  [8f399da3]   Libdl
  [37e2e46d]   LinearAlgebra
  [44cfe95a]   Pkg
  [de0858da]   Printf
  [9a3f8284]   Random
  [2f01184e]   SparseArrays
  [10745b16]   Statistics
    @github-actions
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  2. Merge pull request #702 from JuliaGPU/update_manifest 

    Update manifest
    @maleadt
    maleadt authored May 4, 2020
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  3. Repopulate the pool from freed blocks before allocating.

    @maleadt
    maleadt committed May 4, 2020
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  4. Add missing lock.

    @maleadt
    maleadt committed May 4, 2020
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  5. Merge pull request #704 from JuliaGPU/tb/binned_repopulate 

    Repopulate the pool from freed blocks before allocating.
    @maleadt
    maleadt authored May 4, 2020
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Commits on May 5, 2020

  1. CEnum 0.3 compatibility.

    @maleadt
    maleadt committed May 5, 2020
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  2. Merge pull request #705 from JuliaGPU/tb/cenum 

    CEnum 0.3 compatibility.
    @maleadt
    maleadt authored May 5, 2020
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