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Expand Down Expand Up @@ -1411,7 +1411,7 @@ <h2 id="cleaning-obsolete-snapshots">Cleaning Obsolete Snapshots</h2>
<div class="highlight"><pre><span></span><code>nf-test test tests/main.nf.test --clean-snapshot
</code></pre></div>
<blockquote>
<p><img alt="💡" class="twemoji" src="https://cdn.jsdelivr.net/gh/jdecked/twemoji@15.0.3/assets/svg/1f4a1.svg" title=":bulb:" /> Obsolete snapshots can only be detected when running all tests in a test file simultaneously, and when all tests pass. If you run a single test or if tests are skipped, nf-test cannot detect obsolete snapshots.</p>
<p><img alt="💡" class="twemoji" src="https://cdn.jsdelivr.net/gh/jdecked/twemoji@15.1.0/assets/svg/1f4a1.svg" title=":bulb:" /> Obsolete snapshots can only be detected when running all tests in a test file simultaneously, and when all tests pass. If you run a single test or if tests are skipped, nf-test cannot detect obsolete snapshots.</p>
</blockquote>
<h2 id="constructing-complex-snapshots">Constructing Complex Snapshots</h2>
<p>It is also possible to include multiple objects into one snapshot:</p>
Expand Down Expand Up @@ -1452,7 +1452,7 @@ <h2 id="snapshot-differences">Snapshot Differences</h2>
</ul>
<p>These default arguments are applied when no custom settings are specified.</p>
<blockquote>
<p><img alt="💡" class="twemoji" src="https://cdn.jsdelivr.net/gh/jdecked/twemoji@15.0.3/assets/svg/1f4a1.svg" title=":bulb:" /> If <code>diff</code>is not installed on the system, nf-test will print exepcted and found snapshots without highlighting differences.</p>
<p><img alt="💡" class="twemoji" src="https://cdn.jsdelivr.net/gh/jdecked/twemoji@15.1.0/assets/svg/1f4a1.svg" title=":bulb:" /> If <code>diff</code>is not installed on the system, nf-test will print exepcted and found snapshots without highlighting differences.</p>
</blockquote>
<h3 id="customizing-diff-tool-arguments">Customizing Diff Tool Arguments</h3>
<p>Users have the flexibility to customize the arguments passed to the diff tool using an environment variable called <code>NFT_DIFF_ARGS</code>. This environment variable allows you to modify the way the diff tool behaves when comparing snapshots.</p>
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Expand Down Expand Up @@ -1423,7 +1423,7 @@ <h2 id="syntax">Syntax</h2>
<span class="o">}</span>
</code></pre></div>
<blockquote>
<p><img alt="💡" class="twemoji" src="https://cdn.jsdelivr.net/gh/jdecked/twemoji@15.0.3/assets/svg/1f4a1.svg" title=":bulb:" /> Script paths that start with <code>./</code> or <code>../</code> are considered relative paths. These paths are resolved based on the location of the test script. Relative paths are beneficial when you want to reference files or directories located within the same directory as your test script or in a parent directory. These paths provide a convenient way to access files without specifying the entire path.</p>
<p><img alt="💡" class="twemoji" src="https://cdn.jsdelivr.net/gh/jdecked/twemoji@15.1.0/assets/svg/1f4a1.svg" title=":bulb:" /> Script paths that start with <code>./</code> or <code>../</code> are considered relative paths. These paths are resolved based on the location of the test script. Relative paths are beneficial when you want to reference files or directories located within the same directory as your test script or in a parent directory. These paths provide a convenient way to access files without specifying the entire path.</p>
</blockquote>
<h3 id="multiple-functions">Multiple Functions</h3>
<p>If a Nextflow script contains multiple functions and you want to test them all in the same testsuite, you can override the <code>function</code> property in each test. For example:</p>
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Expand Down Expand Up @@ -1366,7 +1366,7 @@ <h2 id="syntax">Syntax</h2>
<span class="o">}</span>
</code></pre></div>
<blockquote>
<p><img alt="💡" class="twemoji" src="https://cdn.jsdelivr.net/gh/jdecked/twemoji@15.0.3/assets/svg/1f4a1.svg" title=":bulb:" /> Script paths that start with <code>./</code> or <code>../</code> are considered relative paths. These paths are resolved based on the location of the test script. Relative paths are beneficial when you want to reference files or directories located within the same directory as your test script or in a parent directory. These paths provide a convenient way to access files without specifying the entire path.</p>
<p><img alt="💡" class="twemoji" src="https://cdn.jsdelivr.net/gh/jdecked/twemoji@15.1.0/assets/svg/1f4a1.svg" title=":bulb:" /> Script paths that start with <code>./</code> or <code>../</code> are considered relative paths. These paths are resolved based on the location of the test script. Relative paths are beneficial when you want to reference files or directories located within the same directory as your test script or in a parent directory. These paths provide a convenient way to access files without specifying the entire path.</p>
</blockquote>
<h2 id="assertions">Assertions</h2>
<p>The <code>process</code> object can be used in asserts to check its status or error messages.</p>
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Expand Down Expand Up @@ -1366,7 +1366,7 @@ <h2 id="syntax">Syntax</h2>
<span class="o">}</span>
</code></pre></div>
<blockquote>
<p><img alt="💡" class="twemoji" src="https://cdn.jsdelivr.net/gh/jdecked/twemoji@15.0.3/assets/svg/1f4a1.svg" title=":bulb:" /> Script paths that start with <code>./</code> or <code>../</code> are considered relative paths. These paths are resolved based on the location of the test script. Relative paths are beneficial when you want to reference files or directories located within the same directory as your test script or in a parent directory. These paths provide a convenient way to access files without specifying the entire path.</p>
<p><img alt="💡" class="twemoji" src="https://cdn.jsdelivr.net/gh/jdecked/twemoji@15.1.0/assets/svg/1f4a1.svg" title=":bulb:" /> Script paths that start with <code>./</code> or <code>../</code> are considered relative paths. These paths are resolved based on the location of the test script. Relative paths are beneficial when you want to reference files or directories located within the same directory as your test script or in a parent directory. These paths provide a convenient way to access files without specifying the entire path.</p>
</blockquote>
<h2 id="assertions">Assertions</h2>
<p>The <code>workflow</code> object can be used in asserts to check its status, error messages or traces.</p>
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