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Error running nanopolish #98

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jidiaz opened this issue Aug 18, 2022 · 0 comments
Open

Error running nanopolish #98

jidiaz opened this issue Aug 18, 2022 · 0 comments

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@jidiaz
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jidiaz commented Aug 18, 2022

Hi dear development team, hoping everything is ok.

I open this issue due to the error that I obtained running the Artic workflow for my Nanopore dataset.

The printed error is:

Processing 15 files in /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/fastq_pass/barcode01
/data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/genomes_barcode01.fastq 53048
Running: nanopolish index -s /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/sequencing_summary_FAQ95341_0ad5ced2.txt -d /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/ /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/genomes_barcode01.fastq
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode02
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode37
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode29
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode17
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode71
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode03
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode35
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode19
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode78
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode89
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode23
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode09
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode45
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode08
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode90
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode93
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode24
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode27
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode12
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode38
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode49
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode50
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode58
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode86
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode64
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode95
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode76
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode70
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode80
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode42
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode68
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode69
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode79
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode32
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode41
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode26
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode56
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode16
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode96
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode54
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode51
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode52
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode21
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode47
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode34
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode65
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode39
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode40
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode81
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode05
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode20
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode11
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode14
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode74
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode61
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode30
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode91
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode75
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode10
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode94
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode72
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode77
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode25
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode63
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/unclassified
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode36
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode53
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode59
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode22
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode88
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode48
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode15
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode55
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode04
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode07
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode84
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode66
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode28
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode44
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode46
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode13
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode73
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode67
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode57
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode01
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode60
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode33
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode18
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode31
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode82
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode06
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode43
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode62
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode85
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode87
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode92
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode83
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode02
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode37
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode29
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode17
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode71
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode03
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode35
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode19
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode78
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode89
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode23
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode09
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode45
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode08
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode90
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode93
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode24
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode27
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode12
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode38
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode49
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode50
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode58
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode86
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode64
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode95
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode76
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode70
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode80
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode42
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode68
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode69
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode79
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode32
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode41
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode26
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode56
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode16
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode96
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode54
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode51
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode52
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode21
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode47
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode34
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode65
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode39
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode40
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode81
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode05
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode20
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode11
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode14
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode74
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode61
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode30
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode91
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode75
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode10
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode94
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode72
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode77
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode25
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode63
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/unclassified
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode36
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode53
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode59
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode22
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode88
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode48
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode15
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode55
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode04
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode07
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode84
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode66
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode28
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode44
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode46
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode13
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode73
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode67
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode57
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode01
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode60
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode33
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode18
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode31
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode82
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode06
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode43
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode62
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode87
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode92
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode83
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//other_reports
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//genomes
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode02
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode37
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode29
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode17
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode71
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode03
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode35
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode19
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode78
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode89
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode23
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode09
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode45
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode08
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode90
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode93
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode24
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode27
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode12
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode38
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode49
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode50
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode58
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode86
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode64
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode95
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode76
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode70
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode80
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode42
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode68
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode69
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode79
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode32
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode41
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode26
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode56
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode16
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode96
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode54
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode51
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode52
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode21
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode47
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode34
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode65
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode39
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode40
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode81
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode05
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode20
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode11
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode14
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode74
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode61
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode30
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode91
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode75
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode10
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode94
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode72
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode77
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode25
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode63
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/unclassified
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode36
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode53
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode59
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode22
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode88
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode48
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode15
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode55
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode04
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode07
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode84
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode66
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode28
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode44
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode46
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode13
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode73
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode67
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode57
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode01
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode60
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode33
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode18
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode31
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode82
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode06
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode43
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode62
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode85
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode87
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode92
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode83
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode02
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode37
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode29
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode17
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode71
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode03
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode35
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode19
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode78
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode89
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode23
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode09
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode45
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode08
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode90
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode93
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode24
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode27
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode12
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode38
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode49
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode50
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode58
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode86
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode64
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode95
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode76
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode70
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode80
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode42
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode68
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode69
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode79
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode32
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode41
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode26
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode56
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode16
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode96
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode54
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode51
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode52
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode21
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode47
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode34
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode65
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode39
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode40
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode81
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode05
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode20
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode11
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode14
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode74
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode61
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode30
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode91
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode75
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode10
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode94
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode72
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode77
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode25
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode63
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/unclassified
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode36
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode53
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode59
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode22
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode88
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode48
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode15
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode55
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode04
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode07
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode84
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode66
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode28
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode44
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode46
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode13
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode73
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode67
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode57
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode01
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode60
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode33
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode18
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode31
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode82
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode06
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode43
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode62
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode87
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode92
[readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode83
[readdb] num reads: 53048, num reads with path to fast5: 53048
Running: minimap2 -a -x map-ont -t 12 /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.reference.fasta /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/genomes_barcode01.fastq | samtools view -bS -F 4 - | samtools sort -o /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.sorted.bam -
[M::mm_idx_gen::0.0011.65] collected minimizers
[M::mm_idx_gen::0.0023.59] sorted minimizers
[M::main::0.0023.57] loaded/built the index for 1 target sequence(s)
[M::mm_mapopt_update::0.0023.33] mid_occ = 3
[M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1
[M::mm_idx_stat::0.0023.16] distinct minimizers: 5587 (99.93% are singletons); average occurrences: 1.004; average spacing: 5.332
[M::worker_pipeline::1.4075.21] mapped 53048 sequences
[M::main] Version: 2.17-r941
[M::main] CMD: minimap2 -a -x map-ont -t 12 /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.reference.fasta /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/genomes_barcode01.fastq
[M::main] Real time: 1.408 sec; CPU: 7.324 sec; Peak RSS: 0.086 GB
Running: samtools index /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.sorted.bam
Running: align_trim --normalise 200 /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.scheme.bed --start --remove-incorrect-pairs --report /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.alignreport.txt < /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.sorted.bam 2> /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.alignreport.er | samtools sort -T /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01 - -o /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.trimmed.rg.sorted.bam
Running: align_trim --normalise 200 /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.scheme.bed --remove-incorrect-pairs --report /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.alignreport.txt < /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.sorted.bam 2> /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.alignreport.er | samtools sort -T /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01 - -o /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.primertrimmed.rg.sorted.bam
Running: samtools index /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.trimmed.rg.sorted.bam
Running: samtools index /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.primertrimmed.rg.sorted.bam
Running: nanopolish variants --min-flanking-sequence 10 -x 1000000 --progress -t 12 --reads /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/genomes_barcode01.fastq -o /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.1.vcf -b /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.trimmed.rg.sorted.bam -g /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.reference.fasta -w "MN908947.3:1-29904" --ploidy 1 -m 0.15 --read-group 1
[post-run summary] total reads: 31246, unparseable: 0, qc fail: 44, could not calibrate: 131, no alignment: 1321, bad fast5: 0
Running: nanopolish variants --min-flanking-sequence 10 -x 1000000 --progress -t 12 --reads /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/genomes_barcode01.fastq -o /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.2.vcf -b /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.trimmed.rg.sorted.bam -g /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.reference.fasta -w "MN908947.3:1-29904" --ploidy 1 -m 0.15 --read-group 2
[post-run summary] total reads: 34844, unparseable: 0, qc fail: 43, could not calibrate: 168, no alignment: 1402, bad fast5: 0
Running: artic_vcf_merge /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01 /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.scheme.bed 2> /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.primersitereport.txt 1:/data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.1.vcf 2:/data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.2.vcf
Command failed:artic_vcf_merge /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01 /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.scheme.bed 2> /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.primersitereport.txt 1:/data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.1.vcf 2:/data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.2.vcf

And reviewing the log file generated after the run I found the next error:

Traceback (most recent call last):
File "/home/grid/micromamba/envs/artic-ncov2019/bin/artic_vcf_merge", line 10, in
sys.exit(main())
File "/home/grid/micromamba/envs/artic-ncov2019/lib/python3.6/site-packages/artic/vcf_merge.py", line 55, in main
vcf_merge(args)
File "/home/grid/micromamba/envs/artic-ncov2019/lib/python3.6/site-packages/artic/vcf_merge.py", line 26, in vcf_merge
vcf_reader.infos["Pool"] = vcf.parser._Format("Pool", 1, "String", "The pool name")
TypeError: new() missing 1 required positional argument: 'type_code'

I'm very confused about this because the process artic_vcf_merge is launched automatically for the program (all parameters are automatically configured).

If you can help me, I'll be thankful.

Thank's in advance.
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