bedtools version 2.23.0
New features.
- Added
-k
option to theclosest
tool to report the k-closest features in one or more-b
files. - Added
-fd
option to theclosest
tool to for the reporting of downstream features in one or more-b
files. Requires-D
to dictate how "downstream" should be defined. - Added
-fu
option to theclosest
tool to for the reporting of downstream features in one or more-b
files. Requires-D
to dictate how "downstream" should be defined. - @lindenb added a new
split
tool that will split an input file into multiple sub files. Unlike UNIXsplit
, it can balance the chunking of the sub files not just by number of lines, but also by total number of base pairs in each sub file. - Added a new
spacing
tool that reports the distances between features in a file. - @jayhesselberth added a
-reverse
option to themakewindows
tool that reverses the order of the assigned window numbers.
Bug fixes.