Author: Arpith C. Jacob, License: GPL

Several systolic arrays to accelerate the Nussinov RNA folding algorithm. See:

Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs, Arpith Jacob, Jeremy Buhler and Roger Chamberlain, IEEE International Conference on Application-specific Systems, Architectures and Processors, 2008

http://www.cse.wustl.edu/~jarpith/download/dl.cgi?url=asap08

Also: http://www.cse.wustl.edu/~jarpith/thesis.pdf

Note:

• Requires addition of interface code at the top level.