fix environment for output generation #756

	name: Clean Up and Format
	on:
	push:
	branches-ignore:
	- 'main'
	- 'dev'

	permissions:
	contents: write

	jobs:
	clean-up:
	name: Clean Up Python Notebooks
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	with:
	token: ${{ secrets.GH_PAT \|\| github.token }}

	- name: Set up Python 3.10
	uses: actions/setup-python@v4
	with:
	python-version: '3.10'

	- name: Cleanup ipynb output
	run: \|
	pip install --upgrade pip
	pip install nbconvert
	python -m jupyter nbconvert --clear-output --inplace .ipynb /.ipynb //.ipynb ///.ipynb

	- name: Commit clean up changes
	run: ./scripts/commit-and-push.sh "[CI] cleanup python notebooks"

	format:
	name: Format
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	with:
	token: ${{ secrets.GH_PAT \|\| github.token }}

	- name: Set up Python 3.10
	uses: actions/setup-python@v4
	with:
	python-version: '3.10'

	- name: Install Dependencies
	run: \|
	pip install --upgrade pip
	pip install autoflake autopep8 black isort flake8

	- name: Fix lint with autoflake
	run: python -m autoflake spatialyze

	- name: Fix lint with autopep8
	run: python -m autopep8 spatialyze

	- name: Format with black
	run: python -m black --config pyproject.toml spatialyze

	- name: Sort imports with isort
	run: python -m isort spatialyze

	- name: Commit formatted changes
	run: ./scripts/commit-and-push.sh "[CI] format"

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